Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000821`

染色体: Chr03 坐标: 9405709-9411113 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000821`
名称	SmilChr03G000821
描述	disease resistance RPP8-like protein 3
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9405709 - 9411113 / `-`

ID 对照

NCBI Gene ID	`LOC131017424`
GeneID	`131017424`
locus_tag	`-`
NCBI Name	`LOC131017424`
原始查询	`LOC131017424`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance RPP8-like protein 3
产物	disease resistance RPP8-like protein 3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.8; qcov=0.911; evalue=6.09e-59; confidence=low
Rice	`Os10g0358200` - identity=26; qcov=0.983; evalue=4.79e-50; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017424

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057802155.1`
2	Cell membrane	细胞膜	0.60000	`XP_057802155.1`
3	Cytosol	细胞质基质	0.40000	`XP_057802155.1`
4	Nucleus	细胞核	0.00000	`XP_057802155.1`
5	Chromosome	染色体	0.00000	`XP_057802155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9405858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr3:9405860`	`AG`	`A`	1bp_deletion	frameshift_variant	29	A14,A18,A21,A22,B100,B106,B117,B134,B29,B40,B6,B67,B72,B79,B82,B84,B87,B97,C11,C19,C21,C25,C27,C33,C35,C38,C40,C73,C80
`Chr3:9405866`	`TA`	`T`	1bp_deletion	frameshift_variant	153	A10,A13,A15,A16,A18,A19,A23,A24,A3,A6,A8,A9,B1,B101,B102,B104,B105,B108,B110,B111,B113,B115,B118,B119,B121,B122,B123,B126,B127,B130,B134,B139,B14,B140,B18,B19,B20,B22,B23,B24,B25,B26,B29,B3,B30,B31,B32,B33,B34,B37,B38,B4,B44,B45,B46,B49,B50,B51,B52,B53,B54,B57,B58,B6,B61,B62,B64,B65,B67,B68,B70,B72,B73,B74,B76,B8,B81,B82,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B95,B97,C1,C13,C14,C16,C17,C18,C19,C20,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C39,C40,C42,C43,C44,C46,C47,C49,C5,C50,C51,C54,C57,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C80,C81,C82,C83,C85,C86,C9,D11,D2,D3,D4,D6,D8,D9
`Chr3:9405882`	`CTT`	`C`	2bp_deletion	frameshift_variant	105	A13,A14,A18,A20,A21,A22,B100,B104,B106,B108,B11,B111,B112,B117,B120,B122,B123,B124,B126,B133,B134,B135,B136,B140,B15,B2,B24,B30,B32,B34,B36,B37,B39,B40,B43,B45,B47,B48,B49,B51,B54,B58,B6,B60,B61,B64,B66,B67,B68,B7,B72,B76,B78,B79,B80,B82,B83,B84,B86,B87,B9,B91,B94,B97,B99,C11,C14,C16,C17,C18,C19,C21,C22,C24,C27,C3,C30,C31,C33,C34,C35,C36,C37,C38,C4,C40,C42,C46,C5,C51,C54,C6,C66,C68,C69,C70,C71,C73,C75,C8,C80,C83,C85,D10,D9
`Chr3:9405887`	`C`	`CCT`	2bp_insertion	frameshift_variant	69	A14,A18,A22,B100,B104,B108,B11,B114,B117,B120,B122,B123,B124,B134,B136,B140,B15,B2,B29,B30,B32,B34,B39,B45,B58,B6,B61,B66,B67,B72,B76,B78,B79,B80,B82,B83,B84,B87,B9,B91,B94,B97,B99,C11,C16,C18,C19,C21,C24,C27,C31,C33,C35,C37,C38,C4,C42,C51,C54,C6,C66,C68,C69,C7,C71,C8,C80,C85,D10
`Chr3:9405931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr3:9405936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B54,B97,C15,C9
`Chr3:9405955`	`T`	`TGA`	2bp_insertion	frameshift_variant	13	A19,B139,B37,B67,B84,B90,C19,C24,C36,C43,C5,C67,C83
`Chr3:9405966`	`A`	`AGT`	2bp_insertion	stop_gained,frameshift_variant	156	A10,A11,A13,A14,A15,A16,A18,A2,A20,A21,A25,A3,A5,A8,B1,B10,B100,B101,B103,B105,B106,B109,B111,B113,B114,B118,B120,B122,B123,B124,B125,B126,B130,B131,B132,B136,B137,B139,B14,B140,B15,B16,B17,B2,B20,B21,B22,B24,B25,B29,B3,B30,B32,B34,B35,B36,B37,B38,B39,B40,B41,B45,B46,B47,B52,B56,B57,B59,B6,B60,B61,B64,B65,B66,B67,B70,B71,B72,B74,B75,B76,B78,B8,B80,B81,B85,B86,B87,B89,B9,B90,B91,B94,B95,B96,B98,B99,C1,C10,C11,C12,C13,C16,C17,C19,C2,C20,C21,C28,C32,C33,C36,C39,C4,C41,C43,C44,C46,C47,C48,C49,C5,C50,C51,C54,C55,C57,C58,C59,C6,C60,C61,C62,C63,C66,C67,C69,C71,C72,C75,C76,C77,C78,C8,C80,C81,C83,C84,C85,C87,D1,D10,D11,D2,D6,D8
`Chr3:9405988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B13,B29,C60
`Chr3:9405993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr3:9405994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802155.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 508-779 aa PF13855 LRR_8 536-590 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802155.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	7.7e-27	94.7	NB-ARC domain
`XP_057802155.1`	Pfam	`PF23598`	LRR_14	Repeat	508	779	8.4e-26	91.3	Leucine-rich repeat region
`XP_057802155.1`	Pfam	`PF13855`	LRR_8	Repeat	536	590	2.9e-12	46.9	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946172.1
ATTAACTTTCTAACATTCTGAATCCCTAAATCTACTCAAACAAAGTTCACAATTCAGAGCCCTAAGTAAATCTAATCACAGTCCACACCACCGGATTCCGCCGCGCCTCGATCCCCCAACCACGGCTCGCTCGGCGCCACCACCTCCTTCGTCGTTGGTCCGTCGCTAGCAGCCCAGCTCAAACATGTCGGAGGCCCTCCTCTTATCGGTGAAACAGAAGCTGGATAATCATCAAAAGCAGAATCCCCTCATAAATGAGG...

CDS

1 records

下载 CDS FASTA

LOC131017424
ATGTCGGAGGCCCTCCTCTTATCGGTGAAACAGAAGCTGGATAATCATCAAAAGCAGAATCCCCTCATAAATGAGGATATGAAGAAGGTAATTAAAGAGATGAGCGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGAAGAAGCCTCAATTTTTTAGTATCTGACCTTGACGACATGGCTGAAGATGCACTCCACATTTTCAAGCAATACGGATACAGAACGTATAGTTGGACATATGATTCCATCCGTAG...

Protein

1 records

下载 Protein FASTA

XP_057802155.1
MSEALLLSVKQKLDNHQKQNPLINEDMKKVIKEMSEIVDIVRDKKLEEGRSLNFLVSDLDDMAEDALHIFKQYGYRTYSWTYDSIRSWMGEIKKQMLKLGDDESNIRSSETVEDDKYVVGLEEDVEFLIPKRIIGGEECLSSLLIKGMAGIGKTTLAREIYNHPTVIQHFERRAWVSNSTHFTTLKELLIKLIQQVEDPESLHTYSSLENMDNRSLRDMLRKHLLGKRYLIVLDDMPKQMRLKSFWDALPDHYNGSRLLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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