Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000825`

染色体: Chr03 坐标: 9439215-9443410 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000825`
名称	SmilChr03G000825
描述	probable disease resistance protein RF9
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9439215 - 9443410 / `-`

ID 对照

NCBI Gene ID	`LOC131017427`
GeneID	`131017427`
locus_tag	`-`
NCBI Name	`LOC131017427`
原始查询	`LOC131017427`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein RF9
产物	probable disease resistance protein RF9
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.2; qcov=1.08; evalue=7.69e-57; confidence=low
Rice	`Os10g0358200` - identity=26.9; qcov=0.966; evalue=2.78e-51; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017427

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802158.1`
2	Nucleus	细胞核	0.00000	`XP_057802158.1`
3	Chromosome	染色体	0.00000	`XP_057802158.1`
4	Centromere	着丝粒	0.00000	`XP_057802158.1`
5	Chromatin	染色质	0.00000	`XP_057802158.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9439449`	`C`	`CTT`	2bp_insertion	frameshift_variant	1	B21
`Chr3:9439449`	`C`	`CTT`	2bp_insertion	CDS_variant	1	B21
`Chr3:9439450`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C6
`Chr3:9439450`	`TC`	`T`	1bp_deletion	CDS_variant	1	C6
`Chr3:9439453`	`A`	`AC`	1bp_insertion	frameshift_variant	1	C6
`Chr3:9439453`	`A`	`AC`	1bp_insertion	CDS_variant	1	C6
`Chr3:9439484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,C71
`Chr3:9439490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:9439528`	`AG`	`A`	1bp_deletion	frameshift_variant	36	A1,A13,A19,A20,A5,B126,B127,B128,B135,B136,B140,B18,B2,B30,B37,B40,B48,B62,B63,B64,B71,B88,B91,B92,B99,C2,C22,C24,C37,C54,C60,C62,C64,C67,C78,D11
`Chr3:9439563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,C25,D11
`Chr3:9439609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B93,C26,C35,C53
`Chr3:9439610`	`T`	`TG`	1bp_insertion	frameshift_variant	7	B104,B115,B15,B61,B79,C48,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802158.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 137-294 aa PF23598 LRR_14 506-776 aa

XP_057802159.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 137-294 aa PF23598 LRR_14 506-776 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802158.1`	Pfam	`PF00931`	NB-ARC	Domain	137	294	8.3e-31	107.6	NB-ARC domain
`XP_057802158.1`	Pfam	`PF23598`	LRR_14	Repeat	506	776	1.2e-21	77.7	Leucine-rich repeat region
`XP_057802159.1`	Pfam	`PF00931`	NB-ARC	Domain	137	294	8.3e-31	107.6	NB-ARC domain
`XP_057802159.1`	Pfam	`PF23598`	LRR_14	Repeat	506	776	1.2e-21	77.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946175.1
TCACTTGGGTTACAATTTTTAGGGACGGAGGGAATATATGTAAACTCTTTTTATATTGAAAATTTAGATTTTTGCGCTTCATAAAATTTTATTAAGTCGAAAATTAATCATTTTGGAAGCGTGTGAATAAATTATTTCCCTTGAGGAAGGACTTCATGGATCCATATAGTCATCATTATGTAAAGATGAGATTAATTTCATCAAGATTTTTGGTCTCTTCCTTGTTAAGTTTTAGTCTAGTGTAAAATTATTTTCAAATT...

XM_057946176.1
TCACTTGGGTTACAATTTTTAGGGACGGAGGGAATATATGTAAACTCTTTTTATATTGAAAATTTAGATTTTTGCGCTTCATAAAATTTTATTAAGTCGAAAATTAATCATTTTGGAAGCGTGTGAATAAATTATTTCCCTTGAGGAAGGACTTCATGGATCCATATAGTCATCATTATGTAAAGATGAGATTAATTTCATCAAGATTTTTGGTCTCTTCCTTGTTAAGTTTTAGTCTAGTGTAAAATTATTTTCAAATT...

CDS

2 records

下载 CDS FASTA

LOC131017427
ATGTCGGAGGCCCTCCTCTTATCGGTGATACAGAAGCTAGACATCAATTATCGAGAGAATGAAACAAATAATGAAATGGAAAGGGTAATGAAAGAGATGAGAGAGATTATGGATATTGTGAGGGATAAGAAACTGGAAGAGGGAAGAATCCTCAATTTTTTAGTATCTGACCTTGTCGACATGGCTGATGATGCACTCGACCTTTTCATCAGTCAACACAAAAGCTATGGTAGGATGTCTAAGTCCATCTATAGTTGGAT...

Protein

2 records

下载 Protein FASTA

XP_057802158.1
MSEALLLSVIQKLDINYRENETNNEMERVMKEMREIMDIVRDKKLEEGRILNFLVSDLVDMADDALDLFISQHKSYGRMSKSIYSWMGEIKKQMLKLGDDGAEMRSSETVEDDKYVVGLDEDVEFLIRKRIIGGAGKSVLIKGMCGIGKTTLAREIYNHPTVVEHFERRAWVSNSTHFTIKELLIKLIQQLEDPQNLHTSSVLENMDNRSLRDMLSQHLRGKRYLIVLDDVPKQMRLKSFLEALPDQYNGSRLLLTSHTT...

XP_057802159.1
MSEALLLSVIQKLDINYRENETNNEMERVMKEMREIMDIVRDKKLEEGRILNFLVSDLVDMADDALDLFISQHKSYGRMSKSIYSWMGEIKKQMLKLGDDGAEMRSSETVEDDKYVVGLDEDVEFLIRKRIIGGAGKSVLIKGMCGIGKTTLAREIYNHPTVVEHFERRAWVSNSTHFTIKELLIKLIQQLEDPQNLHTSSVLENMDNRSLRDMLSQHLRGKRYLIVLDDVPKQMRLKSFLEALPDQYNGSRLLLTSHTT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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