Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000828`

染色体: Chr03 坐标: 9481327-9506537 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000828`
名称	SmilChr03G000828
描述	probable disease resistance RPP8-like protein 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9481327 - 9506537 / `-`

ID 对照

NCBI Gene ID	`LOC131017430`
GeneID	`131017430`
locus_tag	`-`
NCBI Name	`LOC131017430`
原始查询	`LOC131017430`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance RPP8-like protein 2
产物	probable disease resistance RPP8-like protein 2
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.7; qcov=0.913; evalue=1.57e-56; confidence=low
Rice	`Os08g0193700` - identity=26.7; qcov=0.931; evalue=2.35e-54; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017430

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802160.1`
2	Cytosol	细胞质基质	0.20000	`XP_057802160.1`
3	Nucleus	细胞核	0.00000	`XP_057802160.1`
4	Chromosome	染色体	0.00000	`XP_057802160.1`
5	Centromere	着丝粒	0.00000	`XP_057802160.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9481613`	`T`	`TA`	1bp_insertion	frameshift_variant	122	A1,A10,A11,A18,A19,A22,A23,A24,A4,A8,A9,B1,B100,B101,B102,B104,B106,B109,B11,B111,B112,B117,B12,B120,B121,B123,B129,B13,B133,B135,B136,B14,B140,B16,B17,B2,B20,B21,B24,B25,B27,B28,B29,B3,B30,B31,B35,B4,B40,B41,B42,B46,B47,B48,B49,B56,B57,B58,B60,B62,B64,B66,B67,B68,B69,B71,B72,B74,B76,B77,B79,B81,B82,B84,B86,B87,B9,B91,B93,B95,B97,C10,C11,C15,C16,C17,C18,C19,C22,C26,C27,C28,C3,C30,C31,C33,C34,C35,C39,C4,C42,C45,C46,C47,C48,C50,C51,C55,C57,C61,C62,C64,C68,C69,C70,C71,C77,C8,C80,C81,D1,D11
`Chr3:9481614`	`G`	`GT`	1bp_insertion	frameshift_variant	13	A7,B11,B118,B125,B24,C20,C24,C26,C35,C38,C42,C48,C6
`Chr3:9481627`	`CCG`	`C`	2bp_deletion	frameshift_variant	1	D1
`Chr3:9481627`	`CCG`	`C`	2bp_deletion	CDS_variant	1	D1
`Chr3:9481653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,B24
`Chr3:9481658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B67,B99,C31,C80
`Chr3:9481660`	`TC`	`T`	1bp_deletion	frameshift_variant	20	A10,A23,B1,B119,B136,B140,B15,B30,B58,B64,B66,B84,B91,C18,C28,C4,C64,C66,C8,C85
`Chr3:9481694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:9481700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C60
`Chr3:9481707`	`AG`	`A`	1bp_deletion	frameshift_variant	80	A1,A10,A2,A20,A21,A3,A6,A7,A9,B10,B100,B102,B104,B107,B112,B117,B118,B119,B12,B120,B121,B126,B132,B18,B19,B20,B26,B28,B31,B33,B34,B43,B49,B53,B57,B6,B60,B65,B71,B72,B73,B76,B81,B83,B85,B87,B9,B90,B92,B93,B94,B97,C1,C11,C18,C19,C2,C23,C26,C28,C3,C35,C37,C39,C43,C46,C51,C53,C56,C6,C60,C64,C69,C74,C87,D1,D10,D4,D5,D8
`Chr3:9481713`	`T`	`TC`	1bp_insertion	stop_gained,frameshift_variant	12	A15,A16,A23,B100,B135,B29,B66,C4,C40,C5,D5,D9
`Chr3:9481715`	`C`	`CA`	1bp_insertion	frameshift_variant	11	A15,A16,A23,B100,B135,B66,C4,C40,C5,D5,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802160.1

831 aa

416

831

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 147-302 aa PF23598 LRR_14 512-817 aa PF13855 LRR_8 540-593 aa

XP_057802161.1

831 aa

416

831

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 147-302 aa PF23598 LRR_14 512-817 aa PF13855 LRR_8 540-593 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802160.1`	Pfam	`PF00931`	NB-ARC	Domain	147	302	2.4e-30	106.1	NB-ARC domain
`XP_057802160.1`	Pfam	`PF23598`	LRR_14	Repeat	512	817	9.1e-35	120.8	Leucine-rich repeat region
`XP_057802160.1`	Pfam	`PF13855`	LRR_8	Repeat	540	593	6.3e-11	42.6	Leucine rich repeat
`XP_057802161.1`	Pfam	`PF00931`	NB-ARC	Domain	147	302	2.4e-30	106.1	NB-ARC domain
`XP_057802161.1`	Pfam	`PF23598`	LRR_14	Repeat	512	817	9.1e-35	120.8	Leucine-rich repeat region
`XP_057802161.1`	Pfam	`PF13855`	LRR_8	Repeat	540	593	6.3e-11	42.6	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946178.1
TTCTTCAATGTTCAACATAATTATTCATTAACTCTCTAACATTCTGAATCCCTAATTCTACTCAAACAAAACTCACTATTGAGAGCCCTAAATCTAATCACGGTACACACCGCCGGATTCCGCCGCGCCTCCCCCAACCACTTCGTTGCACGCTCTGCGCCACCACCTCCTTCATCGACGTTGGTCCGTCGCTAGCACGCCAGTTGATATCAAACTCTACCTCTGAGCTGGCTAGACGAGCAAAGATAAGGAGAGTGGGA...

XM_057946177.1
TTCTTCAATGTTCAACATAATTATTCATTAACTCTCTAACATTCTGAATCCCTAATTCTACTCAAACAAAACTCACTATTGAGAGCCCTAAATCTAATCACGGTACACACCGCCGGATTCCGCCGCGCCTCCCCCAACCACTTCGTTGCACGCTCTGCGCCACCACCTCCTTCATCGACGTTGGTCCGTCGCTAGCACGCCAGTTGATATCAAACTCTACCTCTGAGCTGGCTAGACGAGCAAAGATAAGGAGAGTGGGA...

CDS

2 records

下载 CDS FASTA

LOC131017430
ATGTCGGAGGCTCTCCTCTTATCTGTGATACAGAAGCTCGACGTTAATTATCAAGAGACCACAGCAACAGAGTACATGAAAGAGGAAATGGAAAGGGTAATTAAAGAGATGAGAGAGATTGTGGATATAGTGAGGGACAAGAAACTGGAAGAGGGGAGAACCCTAAAGTTTTTGGTATCTGACCTTGTCGACGTTGCTGATGATGCCCTCTACCTTTTCATACGAGATGAAAAATATTATGTGCACTTCTATGAGTCTAT...

Protein

2 records

下载 Protein FASTA

XP_057802160.1
MSEALLLSVIQKLDVNYQETTATEYMKEEMERVIKEMREIVDIVRDKKLEEGRTLKFLVSDLVDVADDALYLFIRDEKYYVHFYESIHSWMGEIKKQMLKLGDDESNMRSSKNVDDEEDDNYVVGLDKDLEMLLRKKVIGGGEYSKKILIKGMDGIGKTTLAREIYNHPTVVEHFERRAWVSNSTHFTIKELLIKLIQQLEDPENLHTSSLLENMDNRSLRDMLRQHLQGKRYLIVLDDVPKQMRLKSFWEALQDEDNGS...

XP_057802161.1
MSEALLLSVIQKLDVNYQETTATEYMKEEMERVIKEMREIVDIVRDKKLEEGRTLKFLVSDLVDVADDALYLFIRDEKYYVHFYESIHSWMGEIKKQMLKLGDDESNMRSSKNVDDEEDDNYVVGLDKDLEMLLRKKVIGGGEYSKKILIKGMDGIGKTTLAREIYNHPTVVEHFERRAWVSNSTHFTIKELLIKLIQQLEDPENLHTSSLLENMDNRSLRDMLRQHLQGKRYLIVLDDVPKQMRLKSFWEALQDEDNGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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