Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000848`

染色体: Chr03 坐标: 9663105-9756398 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000848`
名称	SmilChr03G000848
描述	putative inactive disease susceptibility protein LOV1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	9663105 - 9756398 / `-`

ID 对照

NCBI Gene ID	`LOC131017443`
GeneID	`131017443`
locus_tag	`-`
NCBI Name	`LOC131017443`
原始查询	`LOC131017443`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative inactive disease susceptibility protein LOV1
产物	putative inactive disease susceptibility protein LOV1
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.8; qcov=0.967; evalue=1.76e-64; confidence=low
Rice	`Os01g0547000` - identity=26.6; qcov=1.01; evalue=5.77e-58; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017443

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057802180.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802180.1`
3	Cytosol	细胞质基质	0.40000	`XP_057802180.1`
4	Nucleus	细胞核	0.00000	`XP_057802180.1`
5	Chromosome	染色体	0.00000	`XP_057802180.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:9663254`	`TC`	`T`	1bp_deletion	frameshift_variant	9	A18,A6,B10,B12,B22,B33,B46,B68,C29
`Chr3:9663263`	`TA`	`T`	1bp_deletion	frameshift_variant	42	A13,A21,A5,B101,B103,B113,B119,B122,B124,B129,B16,B17,B24,B32,B34,B37,B39,B49,B53,B57,B75,B84,B88,B91,B95,C15,C16,C25,C3,C46,C49,C51,C54,C55,C66,C70,C71,C77,D1,D3,D4,D8
`Chr3:9663266`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B77,C2,C38
`Chr3:9663300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B10
`Chr3:9663305`	`A`	`AG`	1bp_insertion	frameshift_variant	4	B25,B41,B78,C77
`Chr3:9663305`	`A`	`AG`	1bp_insertion	CDS_variant	4	B25,B41,B78,C77
`Chr3:9663351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B104,B59,B67,B97
`Chr3:9663352`	`TC`	`T`	1bp_deletion	frameshift_variant	4	B17,B84,C66,C8
`Chr3:9663352`	`TC`	`T`	1bp_deletion	CDS_variant	4	B17,B84,C66,C8
`Chr3:9663356`	`TCA`	`T`	2bp_deletion	frameshift_variant	4	A9,B104,B17,B59
`Chr3:9663356`	`TCA`	`T`	2bp_deletion	CDS_variant	4	A9,B104,B17,B59
`Chr3:9663359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B17,B84,C66,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802180.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802181.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802182.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802183.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802184.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802186.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802187.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

XP_057802188.1

830 aa

415

830

NB-ARC

LRR_14

LRR_8

PF00931 NB-ARC 142-298 aa PF23598 LRR_14 510-806 aa PF13855 LRR_8 538-591 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802180.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802180.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802180.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802181.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802181.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802181.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802182.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802182.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802182.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802183.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802183.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802183.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802184.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802184.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802184.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802186.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802186.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802186.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802187.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802187.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802187.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat
`XP_057802188.1`	Pfam	`PF00931`	NB-ARC	Domain	142	298	2.3e-31	109.4	NB-ARC domain
`XP_057802188.1`	Pfam	`PF23598`	LRR_14	Repeat	510	806	3e-29	102.6	Leucine-rich repeat region
`XP_057802188.1`	Pfam	`PF13855`	LRR_8	Repeat	538	591	1.8e-08	34.7	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057946205.1
ATAACTAGTTGAGTCACTCTATAATTGTAATTAACTTTGTGAATTTGTAGTTTATAACCCCCCTCCCAACTTTGTTTAATTTGGCTAGTCAAATCACTCTTAGCTGCCCAGAAACAAGGAGAGAGGGAGCAAAGATAAGAAGAAATTTCACAAAAAGAATACATCGAAGATCAAGACGAGCTAATTTGAGGAGAAGGGAGGATTGAATCAAAAAGTCGATCAAGACGAGCAAAGATAAGAAGAGAAATCACAAAAGGGGC...

XM_057946199.1
ATAACTAGTTGAGTCACTCTATAATTGTAATTAACTTTGTGAATTTGTAGTTTATAACCCCCCTCCCAACTTTGTTTAATTTGGCTAGTCAAATCACTCTTAGCTGCCCAGAAACAAGGAGAGAGGGAGCAAAGATAAGAAGAAATTTCACAAAAAGAATACATCGAAGATCAAGACGAGCTAATTTGAGGAGAAGGGAGGATTGAATCAAAAAGTCGATCAAGACGAGCAAAGATAAGAAGAGAAATCACAAAAGGAAT...

CDS

8 records

下载 CDS FASTA

LOC131017443
ATGTCGAAGGCTCTCCTCTTATCGATGATACAGAAGCTCGACACTGCAGAAATAGCCGAGAACAAAAAAGAGAGAAGGGAAAGGTTAATTAAAGAGATGAGAAAGATTGTGGATATTGTGAGGGATAAGCAATTGAAAGAGGGGAGAAGCCTCAATTTTTTGGTATGTGACCTTGTCGATGTGGCTGACCATGCCATCGACCTTTTCACACAAAAAATGACCTTTCGTGGGGCCTTTGCATCCATCGGTAGTTGGATGGG...

Protein

8 records

下载 Protein FASTA

XP_057802180.1
MSKALLLSMIQKLDTAEIAENKKERRERLIKEMRKIVDIVRDKQLKEGRSLNFLVCDLVDVADHAIDLFTQKMTFRGAFASIGSWMGEIKKQMLKMGDDDEFNMRSLENVDDDEDDKYVVGLDKDLEMLLSKRIIGGKQYLSTVLIKGMSGIGKTTLAREIYNHASVSHHFDTRAWVSSSTYFTMKELLIKLIQQLEDPQNLHTSSLLEEMDNRSLRYMLHQHLQGKRYLIVLDDLPKQMCFKSFREALPEEDNGSRLLL...

XP_057802181.1
MSKALLLSMIQKLDTAEIAENKKERRERLIKEMRKIVDIVRDKQLKEGRSLNFLVCDLVDVADHAIDLFTQKMTFRGAFASIGSWMGEIKKQMLKMGDDDEFNMRSLENVDDDEDDKYVVGLDKDLEMLLSKRIIGGKQYLSTVLIKGMSGIGKTTLAREIYNHASVSHHFDTRAWVSSSTYFTMKELLIKLIQQLEDPQNLHTSSLLEEMDNRSLRYMLHQHLQGKRYLIVLDDLPKQMCFKSFREALPEEDNGSRLLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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