当前解析结果
SmilChr03G000852| 统一新 Gene ID | SmilChr03G000852 |
|---|---|
| 名称 | SmilChr03G000852 |
| 描述 | probable disease resistance protein At1g58390 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 9733194 - 9736143 / - |
| NCBI Gene ID | LOC131017446 |
|---|---|
| GeneID | 131017446 |
| locus_tag | - |
| NCBI Name | LOC131017446 |
| 原始查询 | LOC131017446 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58390 |
| 产物 | probable disease resistance protein At1g58390 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=30.8; qcov=1.05; evalue=7.24e-45; confidence=low |
| Rice | Os01g0547000- identity=26.9; qcov=1.02; evalue=1.95e-49; confidence=low |
| GO | GO:0005515 (protein binding); GO:0006952 (defense response); GO:0043531 (ADP binding) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017446 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057802190.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802190.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057802190.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802190.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802190.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:9733418 |
TA |
T |
1bp_deletion | frameshift_variant | 83 | A10,A14,A15,A16,A2,A21,A23,A24,A3,A6,A9,B10,B100,B101,B104,B108,B111,B119,B120,B13,B136,B138,B16,B20,B24,B26,B30,B34,B35,B4,B40,B42,B46,B50,B51,B54,B57,B6,B62,B63,B64,B67,B69,B70,B75,B78,B79,B8,B80,B88,B9,B92,B94,B96,B98,C1,C11,C16,C17,C18,C2,C20,C23,C28,C29,C3,C31,C34,C38,C39,C43,C60,C61,C68,C69,C71,C72,C73,C76,C79,C82,C87,D2 |
Chr3:9733441 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B35,B79,B98,C68 |
Chr3:9733441 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B35,B79,B98,C68 |
Chr3:9733447 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | C23,C28 |
Chr3:9733447 |
GA |
G |
1bp_deletion | CDS_variant | 2 | C23,C28 |
Chr3:9733448 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | B10,B120,B34,B42,B6,B88 |
Chr3:9733452 |
T |
TA |
1bp_insertion | frameshift_variant | 6 | B10,B120,B34,B42,B6,B88 |
Chr3:9733459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B136,B20,B32,C16 |
Chr3:9733488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B31 |
Chr3:9733506 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C25,C58 |
Chr3:9733507 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | A3,C41,C8 |
Chr3:9733507 |
TC |
T |
1bp_deletion | CDS_variant | 3 | A3,C41,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802190.1PF00931
NB-ARC 3-88 aa
PF23598
LRR_14 300-606 aa
PF13855
LRR_8 329-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802190.1 |
Pfam | PF00931 |
NB-ARC | Domain | 3 | 88 | 4.3e-12 | 46.7 | NB-ARC domain |
XP_057802190.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 300 | 606 | 6e-33 | 114.8 | Leucine-rich repeat region |
XP_057802190.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 329 | 382 | 3.8e-09 | 36.9 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。