Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000893`

染色体: Chr03 坐标: 10221382-10224865 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000893`
名称	SmilChr03G000893
描述	putative disease resistance protein At1g50180
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	10221382 - 10224865 / `-`

ID 对照

NCBI Gene ID	`LOC131017488`
GeneID	`131017488`
locus_tag	`-`
NCBI Name	`LOC131017488`
原始查询	`LOC131017488`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein At1g50180
产物	putative disease resistance protein At1g50180
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=34.7; qcov=0.969; evalue=7.59e-42; confidence=low
Rice	`Os06g0158300` (KMK0024M20.32) - identity=30.7; qcov=0.994; evalue=5.59e-39; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:131017488

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802217.1`
2	Nucleus	细胞核	0.00000	`XP_057802217.1`
3	Chromosome	染色体	0.00000	`XP_057802217.1`
4	Centromere	着丝粒	0.00000	`XP_057802217.1`
5	Chromatin	染色质	0.00000	`XP_057802217.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:10222287`	`C`	`T`	EMS_canonical_SNV	stop_gained	39	A18,A24,A8,A9,B100,B117,B129,B132,B15,B24,B28,B3,B44,B46,B47,B48,B71,B76,C1,C12,C15,C29,C32,C43,C47,C52,C53,C59,C60,C61,C63,C65,C67,C68,C72,C86,D5,D6,D7
`Chr3:10222290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,C22
`Chr3:10222329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr3:10222360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,B88,C34
`Chr3:10222371`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B67
`Chr3:10222371`	`AT`	`A`	1bp_deletion	CDS_variant	1	B67
`Chr3:10222410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C74
`Chr3:10222442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,C8
`Chr3:10222444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C74
`Chr3:10222501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:10222525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B131,D1
`Chr3:10222559`	`CCG`	`C`	2bp_deletion	frameshift_variant	32	A10,A23,B1,B109,B119,B122,B124,B136,B140,B15,B2,B30,B32,B58,B61,B64,B66,B84,B9,B91,C16,C18,C28,C4,C46,C51,C54,C64,C66,C8,C85,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802217.1

649 aa

324

649

Rx_N

NB-ARC

WHD_DRP

PF18052 Rx_N 6-89 aa PF00931 NB-ARC 169-354 aa PF23559 WHD_DRP 442-511 aa

XP_057802218.1

644 aa

322

644

Rx_N

NB-ARC

WHD_DRP

PF18052 Rx_N 6-89 aa PF00931 NB-ARC 169-349 aa PF23559 WHD_DRP 437-506 aa

XP_057802219.1

318 aa

159

318

Rx_N

NB-ARC

PF18052 Rx_N 6-89 aa PF00931 NB-ARC 169-306 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802217.1`	Pfam	`PF18052`	Rx_N	Domain	6	89	2.3e-25	89.2	Rx N-terminal domain
`XP_057802217.1`	Pfam	`PF00931`	NB-ARC	Domain	169	354	3.4e-35	121.9	NB-ARC domain
`XP_057802217.1`	Pfam	`PF23559`	WHD_DRP	Domain	442	511	9.3e-18	64.8	Disease resistance protein Winged helix domain
`XP_057802218.1`	Pfam	`PF18052`	Rx_N	Domain	6	89	2.2e-25	89.3	Rx N-terminal domain
`XP_057802218.1`	Pfam	`PF00931`	NB-ARC	Domain	169	349	2.3e-37	128.9	NB-ARC domain
`XP_057802218.1`	Pfam	`PF23559`	WHD_DRP	Domain	437	506	9.2e-18	64.8	Disease resistance protein Winged helix domain
`XP_057802219.1`	Pfam	`PF18052`	Rx_N	Domain	6	89	2.3e-25	89.2	Rx N-terminal domain
`XP_057802219.1`	Pfam	`PF00931`	NB-ARC	Domain	169	306	1.4e-27	97.1	NB-ARC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946234.1
TTGTGACCATCTTGGTGGGGCCTACACTACTCTAAAGTCACGATGGACCAAAAATGCACCTTATCTCGAATATATCCTACCCACCCATCCATCACCATTTCAACCACCAATTAAATATCTCTTCAATTAAAATAAAAAATAAAAAATTGTAAAAGTCGATCGACATGGCAGCGGAGGCGGCGATCTCATCGGCGGTGGAGCTGCTCGGCAATCTGCTGATCCAGAAGGTGAAATCCCTTCGAGGCGTGGAGGGAAATATC...

XM_057946236.1
CCATCTTGGTGGGGCCTACACTACTCTAAAGTCACGATGGACCAAAAATGCACCTTATCTCGAATATATCCTACCCACCCATCCATCACCATTTCAACCACCAATTAAATATCTCTTCAATTAAAATAAAAAATAAAAAATTGTAAAAGTCGATCGACATGGCAGCGGAGGCGGCGATCTCATCGGCGGTGGAGCTGCTCGGCAATCTGCTGATCCAGAAGGTGAAATCCCTTCGAGGCGTGGAGGGAAATATCCAGTCG...

CDS

3 records

下载 CDS FASTA

LOC131017488
ATGGCAGCGGAGGCGGCGATCTCATCGGCGGTGGAGCTGCTCGGCAATCTGCTGATCCAGAAGGTGAAATCCCTTCGAGGCGTGGAGGGAAATATCCAGTCGCTGAAAGAAGAGCTGGAGTGGATGCAATCTTTTCTCAAAGAGGCAAACAAAAGGCAAGCTGGAGACGAAGGGGTGCGTAATTGGATAAAGAAGATCAGAGAAGTTGCTCAAGACGCGGAAGATACAATCGAAATCTTCCTCGTCAATGTCGAGAATGC...

Protein

3 records

下载 Protein FASTA

XP_057802217.1
MAAEAAISSAVELLGNLLIQKVKSLRGVEGNIQSLKEELEWMQSFLKEANKRQAGDEGVRNWIKKIREVAQDAEDTIEIFLVNVENAKNRGLLERCTTFPKRMYHLDRIGHEIESIRARLDAIDKSRERYGIKDFSESAAAEPAARRLQVESRRRLSPLQKDEHLVGIEDDVEKLLRESILDEEKKGLSVAVVEGMGGIGKSTLAREIYNHRQVVAGRFECCGWVVVSSEFTPRETIKQLILELPDSDKRKLREVEETTG...

XP_057802218.1
MAAEAAISSAVELLGNLLIQKVKSLRGVEGNIQSLKEELEWMQSFLKEANKRQAGDEGVRNWIKKIREVAQDAEDTIEIFLVNVENAKNRGLLERCTTFPKRMYHLDRIGHEIESIRARLDAIDKSRERYGIKDFSESAAAEPAARRLQVESRRRLSPLQKDEHLVGIEDDVEKLLRESILDEEKKGLSVAVVEGMGGIGKSTLAREIYNHRQVVAGRFECCGWVVVSSEFTPRETIKQLILELPDSDKRKLREVEETTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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