当前解析结果
SmilChr03G000918| 统一新 Gene ID | SmilChr03G000918 |
|---|---|
| 名称 | SmilChr03G000918 |
| 描述 | disease resistance protein RPH8A-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10486447 - 10490912 / - |
| NCBI Gene ID | LOC131017500 |
|---|---|
| GeneID | 131017500 |
| locus_tag | - |
| NCBI Name | LOC131017500 |
| 原始查询 | LOC131017500 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPH8A-like |
| 产物 | disease resistance protein RPH8A-like |
| Arabidopsis | AT5G48620 (AT5G48620)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=30.5; qcov=1.04; evalue=1.2e-102; confidence=low |
| Rice | Os01g0547000- identity=27.4; qcov=1.03; evalue=3.32e-80; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017500 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802238.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802238.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802238.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802238.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802238.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10486604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:10486766 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr3:10490058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr3:10490230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B74,C79 |
Chr3:10490246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C73 |
Chr3:10490272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B61,B76,B95,C81 |
Chr3:10490299 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | C57,D9 |
Chr3:10490299 |
TC |
T |
1bp_deletion | CDS_variant | 2 | C57,D9 |
Chr3:10490303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C73 |
Chr3:10490332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,B47,C47 |
Chr3:10490341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:10490367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802238.1PF18052
Rx_N 6-91 aa
PF00931
NB-ARC 178-344 aa
PF23559
WHD_DRP 430-484 aa
PF23559
WHD_DRP 479-528 aa
PF23598
LRR_14 576-876 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802238.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 91 | 2.1e-25 | 89.3 | Rx N-terminal domain |
XP_057802238.1 |
Pfam | PF00931 |
NB-ARC | Domain | 178 | 344 | 3.5e-37 | 128.3 | NB-ARC domain |
XP_057802238.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 484 | 6.6e-19 | 68.4 | Disease resistance protein Winged helix domain |
XP_057802238.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 479 | 528 | 6.6e-19 | 68.4 | Disease resistance protein Winged helix domain |
XP_057802238.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 576 | 876 | 1e-25 | 91.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。