当前解析结果
SmilChr01G001361| 统一新 Gene ID | SmilChr01G001361 |
|---|---|
| 名称 | SmilChr01G001361 |
| 描述 | uncharacterized SmilChr01G001361 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 26960517 - 26965687 / - |
| NCBI Gene ID | LOC131017512 |
|---|---|
| GeneID | 131017512 |
| locus_tag | - |
| NCBI Name | LOC131017512 |
| 原始查询 | LOC131017512 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transferases/nucleotidyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:3770677]; symbol=AT5G19485; hit=AT5G19485; species=arabidopsis; confidence=high |
| 产物 | transferases/nucleotidyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:3770677]; symbol=AT5G19485; hit=AT5G19485; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G19485 (AT5G19485)transferases/nucleotidyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:3770677] identity=68.3; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0338900- identity=66; qcov=1; evalue=0; confidence=high |
| GO | GO:0002183 (cytoplasmic translational initiation); GO:0003743 (translation initiation factor activity); GO:0005085 (guanyl-nucleotide exchange factor activity); GO:0005851 (eukaryotic translation initiation factor 2B complex); GO:0009058 (biosynthetic process); GO:0032045 (guanyl-nucleotide exchange factor complex) |
| KEGG | - |
| Pfam | PF00483 (NTP_transferase); PF12804 (NTP_transf_3); PF25084 (LbH_EIF2B); PF25087 (GMPPB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017512 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057802254.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057802254.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057802254.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802254.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802254.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:26960787 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:26961294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B49,C25,D11 |
Chr1:26961573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr1:26961611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C56,C60 |
Chr1:26961953 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B41,C10 |
Chr1:26961965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,B90,B92 |
Chr1:26962279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B13,B24,B71,C85 |
Chr1:26962315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B40,B47,C35 |
Chr1:26962852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:26962994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:26963117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B20,B40,B47,C35 |
Chr1:26964872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802254.1PF12804
NTP_transf_3 6-131 aa
PF00483
NTP_transferase 6-145 aa
PF25087
GMPPB_C 350-439 aa
PF25084
LbH_EIF2B 354-446 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802254.1 |
Pfam | PF12804 |
NTP_transf_3 | Domain | 6 | 131 | 5.4e-08 | 33.9 | MobA-like NTP transferase domain |
XP_057802254.1 |
Pfam | PF00483 |
NTP_transferase | Family | 6 | 145 | 1.9e-13 | 51.3 | Nucleotidyl transferase |
XP_057802254.1 |
Pfam | PF25087 |
GMPPB_C | Repeat | 350 | 439 | 2.1e-12 | 47.5 | GMPPB C-terminal domain |
XP_057802254.1 |
Pfam | PF25084 |
LbH_EIF2B | Repeat | 354 | 446 | 1.7e-22 | 80.2 | EIF2B subunit epsilon LbH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。