当前解析结果
SmilChr03G000899| 统一新 Gene ID | SmilChr03G000899 |
|---|---|
| 名称 | SmilChr03G000899 |
| 描述 | disease susceptibility protein LOV1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10272197 - 10276604 / + |
| NCBI Gene ID | LOC131017514 |
|---|---|
| GeneID | 131017514 |
| locus_tag | - |
| NCBI Name | LOC131017514 |
| 原始查询 | LOC131017514 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease susceptibility protein LOV1-like |
| 产物 | disease susceptibility protein LOV1-like |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=30.8; qcov=1.04; evalue=5.66e-97; confidence=low |
| Rice | Os01g0547000- identity=28.7; qcov=1.04; evalue=1.09e-85; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017514 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802252.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802252.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802252.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802252.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802252.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10272670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr3:10272687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:10272690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:10272713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr3:10272748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr3:10272835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B108,C23,C65 |
Chr3:10272840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B117,B21,B29,C35 |
Chr3:10272872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C74 |
Chr3:10272902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B34,B68,C80,D2 |
Chr3:10272919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr3:10272959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B34,B68,C80,D2 |
Chr3:10272965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B57,B7,C34,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802252.1PF18052
Rx_N 6-90 aa
PF00931
NB-ARC 169-336 aa
PF23559
WHD_DRP 425-495 aa
PF23598
LRR_14 545-845 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802252.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 90 | 2.7e-24 | 85.8 | Rx N-terminal domain |
XP_057802252.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 336 | 6.2e-36 | 124.3 | NB-ARC domain |
XP_057802252.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 495 | 3.7e-17 | 62.8 | Disease resistance protein Winged helix domain |
XP_057802252.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 545 | 845 | 1.5e-23 | 83.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。