Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000980`

染色体: Chr03 坐标: 11075272-11146287 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000980`
名称	SmilChr03G000980
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	11075272 - 11146287 / `+`

ID 对照

NCBI Gene ID	`LOC131017525`
GeneID	`131017525`
locus_tag	`-`
NCBI Name	`LOC131017525`
原始查询	`LOC131017525`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.2; qcov=1.08; evalue=3.49e-64; confidence=low
Rice	`Os01g0547000` - identity=25.6; qcov=0.909; evalue=9.42e-55; confidence=low
GO	GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057802283.1`
2	Cytoplasm	细胞质	0.40000	`XP_057802283.1`
3	Cytosol	细胞质基质	0.40000	`XP_057802283.1`
4	Nucleus	细胞核	0.00000	`XP_057802283.1`
5	Chromosome	染色体	0.00000	`XP_057802283.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:11143522`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B43
`Chr3:11143522`	`GA`	`G`	1bp_deletion	CDS_variant	1	B43
`Chr3:11143553`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B43
`Chr3:11143553`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B43
`Chr3:11143593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:11143594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr3:11143605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,B63
`Chr3:11143618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:11143626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B98
`Chr3:11143633`	`C`	`CTA`	2bp_insertion	stop_gained,frameshift_variant	5	B18,B85,C37,C5,C75
`Chr3:11143633`	`C`	`CTA`	2bp_insertion	CDS_variant	5	B18,B85,C37,C5,C75
`Chr3:11143644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A4,B98,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802283.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057802284.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057802285.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057802286.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057802288.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

XP_057802289.1

828 aa

414

828

NB-ARC

LRR_14

PF00931 NB-ARC 139-298 aa PF23598 LRR_14 508-806 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802283.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802283.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057802284.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802284.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057802285.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802285.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057802286.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802286.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057802288.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802288.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region
`XP_057802289.1`	Pfam	`PF00931`	NB-ARC	Domain	139	298	6.1e-30	104.8	NB-ARC domain
`XP_057802289.1`	Pfam	`PF23598`	LRR_14	Repeat	508	806	1.7e-28	100.1	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057946306.1
TATAAACTGGCGATCTTATTATTTTATTAGAGGTTGTTAAATGTGCACATTATTTGGCTGCTTCAACTCGACATTCAGTATAATTAATCACAACTTTCTAACATTCTAAATCCCTAACTCTACTCAAACGAGATTCTCTATTCAGAGCCCTAAATCTAATCACAGTAAACACCGCCGGATTCCGCCGCGCCATTCCCCAGCCGTTGCTCGCTCGGCGCCACTACGTCCTTCCGTCACCAGCAGCCCAGTTCAGTTTGTGT...

XM_057946302.1
AACATTCAAAATCCCTAATTCTACTCAAACGAAATTCACTATTCAGAGCCCTAAATCTAATCACAGTAAACACCACCGGATTCTGCCGCGCCGTTGCTGGCTCGGCGCCACCACGTCCTTCTGTCGCCGGCAGCCAAGTTCAGTTTGTGTTTGAGCAATTGAGACAAGGGGAGATTGAATAGGAAAGATAAGACGAAGAATCACTCAAGGGTGCATTGGAAAATCAAGACGAGCTCATTTCATGAAATGTGAGGATTGAA...

CDS

6 records

下载 CDS FASTA

LOC131017525
ATGTCGGAGGCTCTCCTCTTATCGGTGATACAGAAGCTAGACATTAATTATGGAGATGACACGAAAACAAAGGAGATTATAAAAGAGCAAATGGAAAGGGTAATTAAAGATATGAGAGAGATTGTGGATATTGTGAGGGATAAGAAATTGGAAGAGGGGAGAAGCCTAAATTTTTTGGTATCTGACCTTGTCGACATGGCTGACGATGCTCTCGACCTTTGCAAACAACACGTAACATATTATAGAGACTATGAGTCCAT...

Protein

6 records

下载 Protein FASTA

XP_057802283.1
MSEALLLSVIQKLDINYGDDTKTKEIIKEQMERVIKDMREIVDIVRDKKLEEGRSLNFLVSDLVDMADDALDLCKQHVTYYRDYESIHSWIGEIKKQILKLGDNGVETESNIRSSENVDAVGLEEDVQMLLRKRIIGGEDDLKTILIKGMCGSGKTTLAREIYNHATVIERFEHRAWVSNSTYFTLKELLFKLIQQVDPQNLHTSSLLENMDNRRLRDMLCQHLQGTRYFIVLDDMPKQMHLESFLEALPDEDNRSRLLL...

XP_057802284.1
MSEALLLSVIQKLDINYGDDTKTKEIIKEQMERVIKDMREIVDIVRDKKLEEGRSLNFLVSDLVDMADDALDLCKQHVTYYRDYESIHSWIGEIKKQILKLGDNGVETESNIRSSENVDAVGLEEDVQMLLRKRIIGGEDDLKTILIKGMCGSGKTTLAREIYNHATVIERFEHRAWVSNSTYFTLKELLFKLIQQVDPQNLHTSSLLENMDNRRLRDMLCQHLQGTRYFIVLDDMPKQMHLESFLEALPDEDNRSRLLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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