当前解析结果
SmilChr03G000947| 统一新 Gene ID | SmilChr03G000947 |
|---|---|
| 名称 | SmilChr03G000947 |
| 描述 | disease resistance RPP8-like protein 3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10741303 - 10745284 / + |
| NCBI Gene ID | LOC131017526 |
|---|---|
| GeneID | 131017526 |
| locus_tag | - |
| NCBI Name | LOC131017526 |
| 原始查询 | LOC131017526 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance RPP8-like protein 3 |
| 产物 | disease resistance RPP8-like protein 3 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.3; qcov=1.02; evalue=1.03e-63; confidence=low |
| Rice | Os01g0547000- identity=26.1; qcov=0.886; evalue=2.54e-55; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802290.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057802290.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802290.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802290.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802290.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10742389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B23 |
Chr3:10742395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B41,C57,C77 |
Chr3:10742417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr3:10742437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B8 |
Chr3:10742534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C28 |
Chr3:10742561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:10742564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B71,C32,D7 |
Chr3:10742582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B74,B89,C79 |
Chr3:10742584 |
AC |
A |
1bp_deletion | frameshift_variant | 36 | A4,A9,B105,B106,B107,B121,B13,B133,B20,B30,B31,B35,B55,B61,B65,B69,B71,B72,B78,B8,B85,B86,B97,B98,C11,C21,C29,C31,C33,C35,C69,C75,C8,C83,C9,D3 |
Chr3:10742607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C74 |
Chr3:10742626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B49 |
Chr3:10742646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802290.1PF00931
NB-ARC 139-296 aa
PF23598
LRR_14 505-811 aa
XP_057802291.1PF00931
NB-ARC 139-296 aa
PF23598
LRR_14 505-811 aa
XP_057802292.1PF00931
NB-ARC 139-295 aa
PF23598
LRR_14 504-810 aa
XP_057802293.1PF00931
NB-ARC 139-295 aa
PF23598
LRR_14 504-810 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802290.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 296 | 5.7e-28 | 98.3 | NB-ARC domain |
XP_057802290.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 505 | 811 | 8.5e-33 | 114.3 | Leucine-rich repeat region |
XP_057802291.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 296 | 5.7e-28 | 98.3 | NB-ARC domain |
XP_057802291.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 505 | 811 | 8.5e-33 | 114.3 | Leucine-rich repeat region |
XP_057802292.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 295 | 4.7e-29 | 101.9 | NB-ARC domain |
XP_057802292.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 504 | 810 | 8.1e-33 | 114.3 | Leucine-rich repeat region |
XP_057802293.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 295 | 4.7e-29 | 101.9 | NB-ARC domain |
XP_057802293.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 504 | 810 | 8.1e-33 | 114.3 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。