Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001125`

染色体: Chr03 坐标: 12952551-12958573 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001125`
名称	SmilChr03G001125
描述	uncharacterized SmilChr03G001125
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12952551 - 12958573 / `+`

ID 对照

NCBI Gene ID	`LOC131017527`
GeneID	`131017527`
locus_tag	`-`
NCBI Name	`LOC131017527`
原始查询	`LOC131017527`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:818153]; symbol=SAMTL; hit=AT2G35800; species=arabidopsis; confidence=high
产物	mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:818153]; symbol=SAMTL; hit=AT2G35800; species=arabidopsis; confidence=high
Arabidopsis	`AT2G35800` (SAMTL) mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:818153] identity=60.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os11g0103700` - identity=71.4; qcov=0.676; evalue=0; confidence=high
GO	GO:0000095 (S-adenosyl-L-methionine transmembrane transporter activity); GO:0005509 (calcium ion binding); GO:0005743 (mitochondrial inner membrane)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131017527

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802294.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057802294.1`
3	Mitochondrion	线粒体	0.20000	`XP_057802294.1`
4	Nucleus	细胞核	0.00000	`XP_057802294.1`
5	Chromosome	染色体	0.00000	`XP_057802294.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12953339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:12953429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B48,C45,D5
`Chr3:12953451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B48,C45,D5
`Chr3:12953528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:12953605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr3:12953739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,C53
`Chr3:12953960`	`AT`	`A`	1bp_deletion	frameshift_variant	1	A19
`Chr3:12953960`	`AT`	`A`	1bp_deletion	CDS_variant	1	A19
`Chr3:12953980`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B111,C53,D11
`Chr3:12954002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:12954054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:12954068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802294.1

823 aa

412

823

Mito_carr

PF00153 Mito_carr 545-625 aa PF00153 Mito_carr 638-717 aa PF00153 Mito_carr 723-812 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802294.1`	Pfam	`PF00153`	Mito_carr	Repeat	545	625	7.1e-44	148.2	Mitochondrial carrier protein
`XP_057802294.1`	Pfam	`PF00153`	Mito_carr	Repeat	638	717	7.1e-44	148.2	Mitochondrial carrier protein
`XP_057802294.1`	Pfam	`PF00153`	Mito_carr	Repeat	723	812	7.1e-44	148.2	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946311.1
TTTTTTTTTTTCTTTTCTTTATCTGTATTAAATGTGAGATACTAAAATCGGAAAATAGCCTCACTGCTAATTTGCTACCGCCTTTGTTTGTTGTTCTTCATTATCACCATTCAGATTCCTCAGATTTGCTTCAAGAATTGCAAATTTGTTTTTGAAAAATACCTCCTTGAAATATTATTAGCCTCACAAATTTCCAGAACAATTTCTAGTGAAATTATATTTTAACAGGAGGCAGAAATCCCACAAAATATACCTCATTA...

CDS

1 records

下载 CDS FASTA

LOC131017527
ATGGTGGTGTCAGGGAATGACCCGTTGGAGTCGTTTTTGAATTCGATTCAAGTTGTTAGGAACGCCTTTTCTCCTATAGAATCGAATTTTCAGAAGGTTACCAAAAATTTCGAGCATTGTTTTAACGGGGCTTCAAAGAATCGGAACTTGAACGGTAGGTTGGATGATGCTAGTAATGAGGTGGTGGCAGCTCAGTTGGATTTGAAGAAGAAGAGTGGTCAACATGTTGATGGAAATGGCGGTGATGGGAGGAAAAAGAG...

Protein

1 records

下载 Protein FASTA

XP_057802294.1
MVVSGNDPLESFLNSIQVVRNAFSPIESNFQKVTKNFEHCFNGASKNRNLNGRLDDASNEVVAAQLDLKKKSGQHVDGNGGDGRKKRVPIKIFVGVFKDKGVSSVHSNVHVSRDDNVNLSRKGLKERYGYDTGGNEDKSFHGNCLHLDVALSFLINGFVQALPRSFKHEKRQVHKMSNADKESRVKAEVKSRVGSEIKQELKVKEGKDLPFEYFIGFVVDQFNNFPKFDVGVQENECKSAECKPSPAPVNQFDHFKAFFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器