当前解析结果
SmilChr03G000989| 统一新 Gene ID | SmilChr03G000989 |
|---|---|
| 名称 | SmilChr03G000989 |
| 描述 | uncharacterized SmilChr03G000989 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 11220188 - 11227976 / + |
| NCBI Gene ID | LOC131017544 |
|---|---|
| GeneID | 131017544 |
| locus_tag | - |
| NCBI Name | LOC131017544 |
| 原始查询 | LOC131017544 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | carboxyl-terminal peptidase (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:831964]; symbol=AT5G18460; hit=AT5G18460; species=arabidopsis; confidence=high |
| 产物 | carboxyl-terminal peptidase (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:831964]; symbol=AT5G18460; hit=AT5G18460; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G18460 (AT5G18460)carboxyl-terminal peptidase (DUF239) [Source:NCBI gene (formerly Entrezgene);Acc:831964] identity=71.8; qcov=0.776; evalue=0; confidence=high |
| Rice | Os08g0566100- identity=61.2; qcov=0.76; evalue=1.09e-171; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03080 (Neprosin); PF14365 (Neprosin_AP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017544 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057802316.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057802316.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057802316.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802316.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802316.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:11220808 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | A14,A5,B17,B26,C3,C34,C6,C78 |
Chr3:11220811 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | A14,A5,B17,B26,C3,C34,C6,C78 |
Chr3:11220825 |
A |
AGG |
2bp_insertion | frameshift_variant | 28 | A13,A24,B101,B111,B120,B134,B40,B42,B43,B44,B5,B52,B57,B60,B62,B63,B79,B83,C13,C28,C4,C52,C58,C74,C82,C85,C87,D10 |
Chr3:11220868 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | D10 |
Chr3:11220868 |
G |
GT |
1bp_insertion | CDS_variant | 1 | D10 |
Chr3:11220931 |
GT |
G |
1bp_deletion | frameshift_variant | 28 | A1,A14,A19,A21,A9,B100,B104,B113,B2,B20,B27,B29,B35,B51,B71,B73,B85,B93,C1,C17,C2,C27,C43,C53,C58,C8,C86,D5 |
Chr3:11220956 |
CTA |
C |
2bp_deletion | frameshift_variant | 2 | A21,B71 |
Chr3:11220956 |
CTA |
C |
2bp_deletion | CDS_variant | 2 | A21,B71 |
Chr3:11220958 |
ATC |
* |
2bp_deletion | CDS_variant | 2 | A21,B71 |
Chr3:11221044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A25 |
Chr3:11221050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C65 |
Chr3:11221147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802316.1PF14365
Neprosin_AP 152-282 aa
PF03080
Neprosin 307-519 aa
XP_057802317.1PF14365
Neprosin_AP 152-282 aa
PF03080
Neprosin 307-519 aa
XP_057802318.1PF14365
Neprosin_AP 152-282 aa
PF03080
Neprosin 307-519 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802316.1 |
Pfam | PF14365 |
Neprosin_AP | Family | 152 | 282 | 5.3e-45 | 153.5 | Neprosin activation peptide |
XP_057802316.1 |
Pfam | PF03080 |
Neprosin | Family | 307 | 519 | 5.5e-88 | 294.6 | Neprosin |
XP_057802317.1 |
Pfam | PF14365 |
Neprosin_AP | Family | 152 | 282 | 5.3e-45 | 153.5 | Neprosin activation peptide |
XP_057802317.1 |
Pfam | PF03080 |
Neprosin | Family | 307 | 519 | 5.5e-88 | 294.6 | Neprosin |
XP_057802318.1 |
Pfam | PF14365 |
Neprosin_AP | Family | 152 | 282 | 5.3e-45 | 153.5 | Neprosin activation peptide |
XP_057802318.1 |
Pfam | PF03080 |
Neprosin | Family | 307 | 519 | 5.5e-88 | 294.6 | Neprosin |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。