当前解析结果
SmilChr03G000966| 统一新 Gene ID | SmilChr03G000966 |
|---|---|
| 名称 | SmilChr03G000966 |
| 描述 | UDP-glycosyltransferase 86A1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10886523 - 10889652 / + |
| NCBI Gene ID | LOC131017550 |
|---|---|
| GeneID | 131017550 |
| locus_tag | - |
| NCBI Name | LOC131017550 |
| 原始查询 | LOC131017550 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glycosyltransferase 86A1-like |
| 产物 | UDP-glycosyltransferase 86A1-like |
| Arabidopsis | AT2G36970 (AT2G36970)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818271] identity=46.7; qcov=1.01; evalue=1.64e-150; confidence=high |
| Rice | Os10g0442400- identity=42.8; qcov=0.996; evalue=3.66e-132; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017550 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802328.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057802328.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802328.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802328.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802328.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10886624 |
T |
TGG |
2bp_insertion | frameshift_variant | 5 | B104,B34,B41,C10,C74 |
Chr3:10886624 |
T |
TGG |
2bp_insertion | CDS_variant | 5 | B104,B34,B41,C10,C74 |
Chr3:10886627 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | B104,B34,C10,C74 |
Chr3:10886627 |
CA |
C |
1bp_deletion | CDS_variant | 4 | B104,B34,C10,C74 |
Chr3:10886649 |
TGA |
T |
2bp_deletion | frameshift_variant | 6 | A19,A3,B121,B124,B49,B79 |
Chr3:10886799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B7,C32,C60,D11 |
Chr3:10886828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B64,C24,C42,C87 |
Chr3:10886858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B78,C72 |
Chr3:10886887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,C3 |
Chr3:10886918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:10886992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr3:10887013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802328.1PF26168
Glyco_transf_N 8-255 aa
PF00201
UDPGT 282-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802328.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 8 | 255 | 1.6e-06 | 29.0 | Glycosyltransferase, N-terminal domain |
XP_057802328.1 |
Pfam | PF00201 |
UDPGT | Family | 282 | 442 | 2.4e-16 | 60.4 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。