Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001093`

染色体: Chr03 坐标: 12623122-12624957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001093`
名称	SmilChr03G001093
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	12623122 - 12624957 / `+`

ID 对照

NCBI Gene ID	`LOC131017567`
GeneID	`131017567`
locus_tag	`-`
NCBI Name	`LOC131017567`
原始查询	`LOC131017567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.7; qcov=1.09; evalue=5.85e-34; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=23.4; qcov=0.922; evalue=6.76e-15; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017567

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802351.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802351.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802351.1`
4	Chromosome	染色体	0.00000	`XP_057802351.1`
5	Centromere	着丝粒	0.00000	`XP_057802351.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:12623249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr3:12623286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C65
`Chr3:12623330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,C82
`Chr3:12623370`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B134,B59,B69,B70,D9
`Chr3:12623370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B59,B69,B70,D9
`Chr3:12623523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,B55
`Chr3:12623729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr3:12623890`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B54,B79,C22,C71
`Chr3:12623954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr3:12624047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A4,B109,B127,B5,B57
`Chr3:12624083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr3:12624218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802351.1

384 aa

192

384

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 11-51 aa PF12937 F-box-like 12-54 aa PF08268 FBA_3 107-303 aa PF03478 Beta-prop_KIB1-4 122-308 aa PF07734 FBA_1 125-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802351.1`	Pfam	`PF00646`	F-box	Domain	11	51	6.5e-13	48.7	F-box domain
`XP_057802351.1`	Pfam	`PF12937`	F-box-like	Domain	12	54	3.9e-09	36.9	F-box-like
`XP_057802351.1`	Pfam	`PF08268`	FBA_3	Repeat	107	303	2.8e-14	53.6	F-box associated beta propeller domain
`XP_057802351.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	122	308	9.3e-09	35.9	KIB1-4 beta-propeller
`XP_057802351.1`	Pfam	`PF07734`	FBA_1	Repeat	125	380	3e-21	76.4	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946368.1
TGCCACAAAAAGATGCTGCTCATCTTGACCCTTTCCTATTTATTTTTTCTTCTTAGTCCTCAGAAACATATATCGCAGCATTGGGTATGGAGATCGAAAGCAGTAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGTCAAGACTGCCGGTGAAATCACTGTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCAGCGAAAGATTAATAAAAAAACACCACCAAAATTCGATG...

CDS

1 records

下载 CDS FASTA

LOC131017567
ATGGAGATCGAAAGCAGTAGTCAGCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGTCAAGACTGCCGGTGAAATCACTGTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCAGCGAAAGATTAATAAAAAAACACCACCAAAATTCGATGAAAAACCCATCTTTCCTCCAACAAAGGTTCATTGTAGAGACGGATTCGGTTGAATGGCCTCAGCAATGTTCTCTGCTGTCGGTTTT...

Protein

1 records

下载 Protein FASTA

XP_057802351.1
MEIESSSQQSLHLPEEIIGEILSRLPVKSLLRFRCVSKSWGSLIGSERLIKKHHQNSMKNPSFLQQRFIVETDSVEWPQQCSLLSVLSGPINTIPFSPLAYPTNNALPMGYHFAYPRNTTLSIGYEIVGSCNGLLCIVDDENIFHLWNPSTRIISKKLPEISLVNYLDDFDNFGFGWVESSDEYKVFVNVVKSDSSVGEIYSTRTKSWKTIDLCPYFLPFRKGGVFAGGKLYWMYEDDKVIIFLDLKSEEFGRIEIPFDQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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