Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001150`

染色体: Chr03 坐标: 13256901-13258244 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001150`
名称	SmilChr03G001150
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	13256901 - 13258244 / `+`

ID 对照

NCBI Gene ID	`LOC131017571`
GeneID	`131017571`
locus_tag	`-`
NCBI Name	`LOC131017571`
原始查询	`LOC131017571`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=25.5; qcov=1.11; evalue=1.35e-23; confidence=low
Rice	`Os10g0566300` (OsFbox561) - identity=24.9; qcov=0.909; evalue=1.34e-10; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017571

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802358.1`
2	Cytoplasm	细胞质	0.60000	`XP_057802358.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802358.1`
4	Chromosome	染色体	0.00000	`XP_057802358.1`
5	Centromere	着丝粒	0.00000	`XP_057802358.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:13257033`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B127,B5,C1,C54,C9
`Chr3:13257033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B127,B5,C1,C54,C9
`Chr3:13257041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B5,C1,C54,C9
`Chr3:13257065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr3:13257323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr3:13257410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr3:13257436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:13257806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B124,B136,B18,B85
`Chr3:13257819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr3:13257955`	`T`	`TA`	1bp_insertion	frameshift_variant	3	B119,B136,B18
`Chr3:13257955`	`T`	`TA`	1bp_insertion	CDS_variant	3	B119,B136,B18
`Chr3:13257971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C68,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802358.1

375 aa

188

375

F-box-like

F-box

FBA_3

Beta-prop_KIB1-4

FBA_1

PF12937 F-box-like 12-44 aa PF00646 F-box 12-45 aa PF08268 FBA_3 116-266 aa PF03478 Beta-prop_KIB1-4 132-315 aa PF07734 FBA_1 134-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802358.1`	Pfam	`PF12937`	F-box-like	Domain	12	44	8e-06	26.2	F-box-like
`XP_057802358.1`	Pfam	`PF00646`	F-box	Domain	12	45	3.2e-09	37.0	F-box domain
`XP_057802358.1`	Pfam	`PF08268`	FBA_3	Repeat	116	266	3.1e-12	46.9	F-box associated beta propeller domain
`XP_057802358.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	132	315	3.2e-09	37.4	KIB1-4 beta-propeller
`XP_057802358.1`	Pfam	`PF07734`	FBA_1	Repeat	134	326	1.5e-13	51.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946375.1
ACAAATAAATACGGATAAACACCTAAAACCCTCTTCAAATTCAAAACCCTCGAAACATATATTGAAGATTTGGCAATGGAGATCGAAAGCAGCAGTCAGCAATCTCACCATCTTCCCGAAGCAATCATTGCACAAATACTGTCAAGATCGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCTGCCAACACTTCATCAAAATGCACCTTCAAAATTCAATAGAAACCCCATC...

CDS

1 records

下载 CDS FASTA

LOC131017571
ATGGAGATCGAAAGCAGCAGTCAGCAATCTCACCATCTTCCCGAAGCAATCATTGCACAAATACTGTCAAGATCGCCGGTGAAATCACTCTTGAGATTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGGCTGCCAACACTTCATCAAAATGCACCTTCAAAATTCAATAGAAACCCCATCTTTCCCCCAAAAAAGGGTCTTAATAAGGAAGTATGAGGATGGTATGTTTGATATAAGTGAAATGTTCAATTGGCC...

Protein

1 records

下载 Protein FASTA

XP_057802358.1
MEIESSSQQSHHLPEAIIAQILSRSPVKSLLRFRCVSKSWGSLIGCQHFIKMHLQNSIETPSFPQKRVLIRKYEDGMFDISEMFNWPSPEQCFMCEIDTLHWPRQCSLLSVLSEPTNTIPLSPFVDPKNTTFCKGYQILGCSNGLLCVLDTSNRIHLWNPSTRISKKLPEISIMGSRVRKLGFGWVESSGEYKVFVVVEINRKLVGKVYSSKTKSWKTIEICDYSYACRPRGLFAGGKLYWYFGCIIIFLDLKSEVFGRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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