当前解析结果
SmilChr03G001076| 统一新 Gene ID | SmilChr03G001076 |
|---|---|
| 名称 | SmilChr03G001076 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 12465438 - 12468821 / + |
| NCBI Gene ID | LOC131017593 |
|---|---|
| GeneID | 131017593 |
| locus_tag | - |
| NCBI Name | LOC131017593 |
| 原始查询 | LOC131017593 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=25.1; qcov=0.945; evalue=3.84e-09; confidence=low |
| Rice | -- |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017593 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802381.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057802383.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802383.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802381.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802381.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:12466202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B132 |
Chr3:12466250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr3:12466370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,C15,C52 |
Chr3:12466491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:12466604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:12466670 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:12466736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C44,C80,D5 |
Chr3:12466769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr3:12466777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B99 |
Chr3:12466815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A16,C5,C6,C80 |
Chr3:12466923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr3:12467138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。