当前解析结果
SmilChr03G001209| 统一新 Gene ID | SmilChr03G001209 |
|---|---|
| 名称 | SmilChr03G001209 |
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 13927972 - 13928696 / - |
| NCBI Gene ID | LOC131017601 |
|---|---|
| GeneID | 131017601 |
| locus_tag | - |
| NCBI Name | LOC131017601 |
| 原始查询 | LOC131017601 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 产物 | 6%2C7%2C8-trihydroxycoumarin synthase-like |
| Arabidopsis | AT3G26330 (CYP71B37)cytochrome P450, family 71, subfamily B, polypeptide 37 [Source:NCBI gene (formerly Entrezgene);Acc:822237] identity=54.3; qcov=0.995; evalue=1.69e-67; confidence=high |
| Rice | Os03g0593600 (CYP71W1)- identity=52.2; qcov=0.973; evalue=1.11e-64; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017601 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057802391.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802391.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802391.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802391.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802391.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:13928113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B62,D3 |
Chr3:13928147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B136,B26 |
Chr3:13928152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr3:13928153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,D7 |
Chr3:13928159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B139,C40 |
Chr3:13928164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C16,C42,C56 |
Chr3:13928184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C82 |
Chr3:13928189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr3:13928198 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | A6,B39,B80,B91,B96,C62,D6 |
Chr3:13928222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,C52,C82 |
Chr3:13928226 |
C |
CCG |
2bp_insertion | frameshift_variant | 2 | B49,C82 |
Chr3:13928226 |
C |
CCG |
2bp_insertion | CDS_variant | 2 | B49,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802391.1PF00067
p450 2-179 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802391.1 |
Pfam | PF00067 |
p450 | Domain | 2 | 179 | 7.8e-58 | 197.1 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。