当前解析结果
SmilChr03G000954| 统一新 Gene ID | SmilChr03G000954 |
|---|---|
| 名称 | SmilChr03G000954 |
| 描述 | uncharacterized SmilChr03G000954 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 10795517 - 10796444 / - |
| NCBI Gene ID | LOC131017614 |
|---|---|
| GeneID | 131017614 |
| locus_tag | - |
| NCBI Name | LOC131017614 |
| 原始查询 | LOC131017614 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os11g0581700; species=rice; confidence=low |
| 产物 | hit=Os11g0581700; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os11g0581700- identity=30; qcov=0.583; evalue=8.46e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057802413.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057802413.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057802413.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802413.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802413.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:10795695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:10795696 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | C13 |
Chr3:10795696 |
C |
CA |
1bp_insertion | CDS_variant | 1 | C13 |
Chr3:10795701 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | B82 |
Chr3:10795701 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | B82 |
Chr3:10795716 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B82 |
Chr3:10795716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:10795717 |
CA |
C |
1bp_deletion | frameshift_variant | 28 | A24,A8,A9,B100,B113,B129,B132,B20,B28,B29,B38,B39,B73,B93,C1,C12,C14,C15,C25,C27,C43,C52,C53,C61,C86,C87,D5,D7 |
Chr3:10795740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B140,C48,C72 |
Chr3:10795748 |
C |
T |
EMS_canonical_SNV | stop_gained | 25 | A10,A23,B119,B124,B136,B15,B30,B32,B58,B61,B64,B84,B9,B91,C16,C18,C28,C4,C46,C51,C54,C8,C85,D10,D11 |
Chr3:10795749 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | A22,C27 |
Chr3:10795749 |
AG |
A |
1bp_deletion | CDS_variant | 2 | A22,C27 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。