Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001259

染色体: Chr03 坐标: 14532130-14536847 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001259
名称SmilChr03G001259
描述uncharacterized protein At1g10890-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向14532130 - 14536847 / +

ID 对照

NCBI Gene IDLOC131017770
GeneID131017770
locus_tag-
NCBI NameLOC131017770
原始查询LOC131017770

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632]; symbol=AT1G10890; hit=AT1G10890; species=arabidopsis; confidence=high
产物arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632]; symbol=AT1G10890; hit=AT1G10890; species=arabidopsis; confidence=high
ArabidopsisAT1G10890 (AT1G10890)
arginine/glutamate-rich 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:837632]
identity=65.8; qcov=0.88; evalue=1.45e-51; confidence=high
RiceOs11g0544200
-
identity=60.8; qcov=0.556; evalue=1e-38; confidence=medium
GOGO:0005654 (nucleoplasm); GO:0005739 (mitochondrion); GO:0045296 (cadherin binding)
KEGG-
PfamPF15346 (ARGLU)
InterPro-
eggNOG-
NRGeneID:131017770

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057802472.1
2 Nucleoplasm 核质 1.00000 XP_057802472.1
3 Nuclear speckle 核斑点 0.80000 XP_057802472.1
4 Chromatin 染色质 0.20000 XP_057802472.1
5 Nuclear body 核内小体 0.20000 XP_057802472.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:14532747 G A EMS_canonical_SNV CDS_variant 4 B102,B41,C10,C74
Chr3:14533961 C T EMS_canonical_SNV CDS_variant 2 B54,B86
Chr3:14534006 C T EMS_canonical_SNV CDS_variant 1 B1
Chr3:14534010 G A EMS_canonical_SNV CDS_variant 3 C24,C78,D7
Chr3:14534108 G A EMS_canonical_SNV CDS_variant 1 B6
Chr3:14535803 G A EMS_canonical_SNV CDS_variant 1 B75
Chr3:14535804 G A EMS_canonical_SNV CDS_variant 2 A18,C45
Chr3:14535893 G A EMS_canonical_SNV CDS_variant 1 B24
Chr3:14535916 C T EMS_canonical_SNV CDS_variant 5 B140,C21,C4,C55,D8
Chr3:14535929 C T EMS_canonical_SNV CDS_variant 2 C55,D8
Chr3:14536596 G A EMS_canonical_SNV CDS_variant 2 B111,B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802472.1
266 aa
N
1
133
266
ARGLU
C
PF15346 ARGLU 108-263 aa
XP_057802473.1
266 aa
N
1
133
266
ARGLU
C
PF15346 ARGLU 108-263 aa
XP_057802475.1
266 aa
N
1
133
266
ARGLU
C
PF15346 ARGLU 108-263 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802472.1 Pfam PF15346 ARGLU Coiled-coil 108 263 5.1e-40 137.5 Arginine and glutamate-rich 1
XP_057802473.1 Pfam PF15346 ARGLU Coiled-coil 108 263 5.1e-40 137.5 Arginine and glutamate-rich 1
XP_057802475.1 Pfam PF15346 ARGLU Coiled-coil 108 263 5.1e-40 137.5 Arginine and glutamate-rich 1

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057946489.1
TTTCATGTTGGTTACAATTTCGTCCAATCTTCTCTTATTTCCGTGATCTGCTGGGAGTGCTCGGGTTTACTTTTTCGTCCCTTCCGTTACGCTGATTCTGATTGTATGTACAAAACACCAATCTGTAATAATCTCTTCTTCTTGAGGCGGTTTCATTATTGATTTTGTATACCTTCACTCAATAATTTGGTTAATCCGACTGATCGATATATAATTGTAGCTGGTTTGATTCATTTGGTTTTGATTTTTCCCGTTAAGTG...
XM_057946492.1
TTTCATGTTGGTTACAATTTCGTCCAATCTTCTCTTATTTCCGTGATCTGCTGGGAGTGCTCGGGTTTACTTTTTCGTCCCTTCCGTTACGCTGATTCTGATTATGGGTAGAGAGCGGCAACTGTCTCGGTCGCCGTCGCCTTCTGAGGTGAGGTATGGACGCCGGAGCCGGAGAGAGAAAAGCAGATCCCCTTATTCCTATAGCAGAAGACAAAGGCGTTCATTATCCTCACGACACAGAAGTCGCTCTCCCACTCCAA...

CDS

3 records

下载 CDS FASTA
LOC131017770
ATGGGTAGAGAGCGGCAACTGTCTCGGTCGCCGTCGCCTTCTGAGGTGAGGTATGGACGCCGGAGCCGGAGAGAGAAAAGCAGATCCCCTTATTCCTATAGCAGAAGACAAAGGCGTTCATTATCCTCACGACACAGAAGTCGCTCTCCCACTCCAAGACGTCGTAAAAGCCGCTCACCTACACCGAAGCAGAATAAAAGACAAAGAAAAAGGAGCACTTCTGCATCCCCTTTAAGTGAATCCCCACTCATCGGTACCAA...
LOC131017770
ATGGGTAGAGAGCGGCAACTGTCTCGGTCGCCGTCGCCTTCTGAGGTGAGGTATGGACGCCGGAGCCGGAGAGAGAAAAGCAGATCCCCTTATTCCTATAGCAGAAGACAAAGGCGTTCATTATCCTCACGACACAGAAGTCGCTCTCCCACTCCAAGACGTCGTAAAAGCCGCTCACCTACACCGAAGCAGAATAAAAGACAAAGAAAAAGGAGCACTTCTGCATCCCCTTTAAGTGAATCCCCACTCATCGGTACCAA...

Protein

3 records

下载 Protein FASTA
XP_057802472.1
MGRERQLSRSPSPSEVRYGRRSRREKSRSPYSYSRRQRRSLSSRHRSRSPTPRRRKSRSPTPKQNKRQRKRSTSASPLSESPLIGTKEIKDATEKLKTEEEDKKRRQQELELKLIEEETAKRVAEEIRKKVEESLNSKEINLEIERRLEEGRKKLVAEVAAQLEKEKEAAVIEARKREEQAQREKEELERMLEENRRKVEEAQRREALEQQRREEERYRELEEVQRQKEAALRKKKQQEEEERANQMKLLGKNKSRPKVS...
XP_057802473.1
MGRERQLSRSPSPSEVRYGRRSRREKSRSPYSYSRRQRRSLSSRHRSRSPTPRRRKSRSPTPKQNKRQRKRSTSASPLSESPLIGTKEIKDATEKLKTEEEDKKRRQQELELKLIEEETAKRVAEEIRKKVEESLNSKEINLEIERRLEEGRKKLVAEVAAQLEKEKEAAVIEARKREEQAQREKEELERMLEENRRKVEEAQRREALEQQRREEERYRELEEVQRQKEAALRKKKQQEEEERANQMKLLGKNKSRPKVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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