Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001273`

染色体: Chr03 坐标: 14856149-14866349 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001273`
名称	SmilChr03G001273
描述	uncharacterized SmilChr03G001273
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14856149 - 14866349 / `-`

ID 对照

NCBI Gene ID	`LOC131017780`
GeneID	`131017780`
locus_tag	`-`
NCBI Name	`LOC131017780`
原始查询	`LOC131017780`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os04g0191000; species=rice; confidence=low
产物	hit=Os04g0191000; species=rice; confidence=low
Arabidopsis	`ATMG00860` - identity=37.1; qcov=0.074; evalue=3.36e-19; confidence=weak
Rice	`Os04g0191000` - identity=29.2; qcov=0.493; evalue=1.29e-89; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00078 (RVT_1); PF00665 (rve); PF13650 (Asp_protease_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2)
InterPro	-
eggNOG	-
NR	GeneID:131017780

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057802483.1`
2	Nucleus	细胞核	0.60000	`XP_057802483.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057802483.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.20000	`XP_057802483.1`
5	Chromosome	染色体	0.00000	`XP_057802483.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14859499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C36
`Chr3:14859513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C36
`Chr3:14859527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:14859529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,C36
`Chr3:14860478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B135
`Chr3:14860496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr3:14860515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C45,C82,D5
`Chr3:14860516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B120,B54,C35
`Chr3:14860581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B135,B35,C36,C68
`Chr3:14860584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C42
`Chr3:14860587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C42
`Chr3:14860691`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B65,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802483.1

1810 aa

905

1810

Asp_protease_2

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF13650 Asp_protease_2 629-721 aa PF00078 RVT_1 986-1141 aa PF17919 RT_RNaseH_2 1206-1303 aa PF17917 RT_RNaseH 1233-1333 aa PF17921 Integrase_H2C2 1433-1490 aa PF00665 rve 1511-1604 aa

XP_057802485.1

1784 aa

892

1784

Asp_protease_2

RVT_1

RT_RNaseH_2

RT_RNaseH

Integrase_H2C2

rve

PF13650 Asp_protease_2 603-695 aa PF00078 RVT_1 960-1115 aa PF17919 RT_RNaseH_2 1180-1277 aa PF17917 RT_RNaseH 1207-1307 aa PF17921 Integrase_H2C2 1407-1464 aa PF00665 rve 1485-1578 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802483.1`	Pfam	`PF13650`	Asp_protease_2	Domain	629	721	1.2e-06	29.8	Aspartyl protease
`XP_057802483.1`	Pfam	`PF00078`	RVT_1	Domain	986	1141	1e-29	104.6	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057802483.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1206	1303	6e-32	110.4	RNase H-like domain found in reverse transcriptase
`XP_057802483.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1233	1333	6.1e-37	126.7	RNase H-like domain found in reverse transcriptase
`XP_057802483.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1433	1490	4.5e-12	46.6	Integrase zinc binding domain
`XP_057802483.1`	Pfam	`PF00665`	rve	Domain	1511	1604	9.6e-17	61.8	Integrase core domain
`XP_057802485.1`	Pfam	`PF13650`	Asp_protease_2	Domain	603	695	1.2e-06	29.8	Aspartyl protease
`XP_057802485.1`	Pfam	`PF00078`	RVT_1	Domain	960	1115	9.9e-30	104.6	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057802485.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1180	1277	6e-32	110.4	RNase H-like domain found in reverse transcriptase
`XP_057802485.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1207	1307	6e-37	126.7	RNase H-like domain found in reverse transcriptase
`XP_057802485.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1407	1464	4.6e-12	46.6	Integrase zinc binding domain
`XP_057802485.1`	Pfam	`PF00665`	rve	Domain	1485	1578	9.9e-17	61.8	Integrase core domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009099859.1
GGTTTTGAATCGGGTTTCTCTAGATATTAATGCTGTCGGCTCATTAAACTTATAGAGCGTCTCTTACGGTTGTCAGTCGATTAGAGTAGTAATTAGTGAAGCGTCTTCCTGGTTACCGAATAATTAAGGAGAAATAAGATCACGTCAGAAGCGTCTTCGGTGATTATAACTGGTTTGTTTGCATGATTTAAAGTTATTTTTGCATCCATGATCGGAATAATTGAGCTAGGGTGGACTTAATTGATTGCTGGAATTCTTTT...

XM_057946500.1
TTGGGCGTATTTATACGCATTTATTTGAGGGATTTTAGAATGTTTTCAATGCTTAATTCGTGTTAAATATAATCTTTTGGATATGGATTATGGTCTTATGTGAATTTTGATGGTATTTAATAGGTTTTGAAGAAAAGACATGATTTTGAGAAGAATTTTGAAAGCTTGAAGTGGTAGAGAATGAAGGCTGTGCGGACAAGGATTAATGGGCTGGATCTTTGATTATTATTAACTGATCATATTTAAATTGTTTTGGGATT...

CDS

2 records

下载 CDS FASTA

LOC131017780
ATGCCCCGTTCTTCTCGTACAGGCATATTAGTTTTTGATCCAGAAATCGAGAAAACCGCACGAAAGTTAAAGAAGCAAGCTAAGGAGTGGAAAAAGAGATCAAATTCTGCCCCATCAAGTCTTGAGGAACAACCAAAAATAGAAGTTCCAATGGATGACCGTGATGAGGACGATAGAGAGATCGTGGATCCTCGACAGGAAAGACCTCAACTGATCAGAGAGTTAGGCCGTCATAGAAACAATCGCCCTTTGTGCATTGT...

Protein

2 records

下载 Protein FASTA

XP_057802483.1
MPRSSRTGILVFDPEIEKTARKLKKQAKEWKKRSNSAPSSLEEQPKIEVPMDDRDEDDREIVDPRQERPQLIRELGRHRNNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKTLDEA...

XP_057802485.1
MPRSSRTGILVFDPEIEKTARKLKKQAKEWKKRSNSAPSSLEEQPKIEVPMDDRDEDDREIVDPRQERPQLIRELGRHRNNRPLCIVLPAINGNAEIRPGFIQVLPKFGDLPGESAHKHLAEFDLVCSTLRPHGFTENNLRLLTFSHTLQGRARDWLFDLPPGSIRTWGDLEEQFLRKFFPESRAANLRMAISSIKQKKAESLADYWERFQQLCRKCPDHGFSDYQLLTNYFYRGMSSFDRKIVDAACGGSLTNKTLDEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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