Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001275`

染色体: Chr03 坐标: 14892701-14894798 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001275`
名称	SmilChr03G001275
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	14892701 - 14894798 / `+`

ID 对照

NCBI Gene ID	`LOC131017781`
GeneID	`131017781`
locus_tag	`-`
NCBI Name	`LOC131017781`
原始查询	`LOC131017781`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=27.9; qcov=1.09; evalue=1.06e-26; confidence=low
Rice	`Os09g0479100` (OsFbox492) - identity=23.4; qcov=0.942; evalue=1.24e-17; confidence=weak
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131017781

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802486.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802486.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802486.1`
4	Chromosome	染色体	0.00000	`XP_057802486.1`
5	Centromere	着丝粒	0.00000	`XP_057802486.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:14892785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:14892788`	`A`	`AAG`	2bp_insertion	frameshift_variant	3	A20,B139,B33
`Chr3:14892788`	`A`	`AAG`	2bp_insertion	CDS_variant	3	A20,B139,B33
`Chr3:14892809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:14892839`	`GC`	`G`	1bp_deletion	frameshift_variant	4	B100,B119,C10,C74
`Chr3:14892839`	`GC`	`G`	1bp_deletion	CDS_variant	4	B100,B119,C10,C74
`Chr3:14892952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,B70
`Chr3:14892984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:14893001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B124,B18,B61,B85
`Chr3:14893003`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr3:14893163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr3:14893253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802486.1

381 aa

190

381

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 8-48 aa PF12937 F-box-like 9-46 aa PF08268 FBA_3 113-297 aa PF03478 Beta-prop_KIB1-4 116-305 aa PF07734 FBA_1 120-376 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802486.1`	Pfam	`PF00646`	F-box	Domain	8	48	2.7e-11	43.6	F-box domain
`XP_057802486.1`	Pfam	`PF12937`	F-box-like	Domain	9	46	2.8e-09	37.3	F-box-like
`XP_057802486.1`	Pfam	`PF08268`	FBA_3	Repeat	113	297	2.4e-12	47.2	F-box associated beta propeller domain
`XP_057802486.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	116	305	1.7e-07	31.7	KIB1-4 beta-propeller
`XP_057802486.1`	Pfam	`PF07734`	FBA_1	Repeat	120	376	4.6e-19	69.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946503.1
CTTCTTAGCCCTCAGAAACATATTGGGTATGGAGATCGAAAGCCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCCGTGAAATCACTGTTGAGACTCAGGTGCGTTTCGAAATCATGGCGCTCTTTAATTGGCACCGAAAGATTCATAAAAAAACACCACCAAAATTCGATGAAAAACCCATCTTTCACCCAACAAAGGTTCATTGTAGAGACGAATTTGGTTGAATGGCCTAAGCAAT...

CDS

1 records

下载 CDS FASTA

LOC131017781
ATGGAGATCGAAAGCCAATCTCTCCATCTTCCGGAAGAAATCATTGGAGAAATACTGCCAAGACTGCCCGTGAAATCACTGTTGAGACTCAGGTGCGTTTCGAAATCATGGCGCTCTTTAATTGGCACCGAAAGATTCATAAAAAAACACCACCAAAATTCGATGAAAAACCCATCTTTCACCCAACAAAGGTTCATTGTAGAGACGAATTTGGTTGAATGGCCTAAGCAATGTACTCTGCTGTCGGTTTTGAGCGGACC...

Protein

1 records

下载 Protein FASTA

XP_057802486.1
MEIESQSLHLPEEIIGEILPRLPVKSLLRLRCVSKSWRSLIGTERFIKKHHQNSMKNPSFTQQRFIVETNLVEWPKQCTLLSVLSGPINTIPFSPLAYPTNTTLFSRLAYPRNTTLPMGYDIVGSCNGLLCIVNDENIFHLWNPSTRIISKKLPEISIVNDLNDFDNFGFGWVESSDEYKVFVNVVECHSSVGEIYSTRTKSWKTIELCPYFIPFSRGGLFGGGKLYWMYDDDEVIIFLDLKSEVFGRIEIPSDQEKMYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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