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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001292

染色体: Chr03 坐标: 15126082-15131174 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001292
名称SmilChr03G001292
描述bifunctional riboflavin kinase/FMN phosphatase-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向15126082 - 15131174 / +

ID 对照

NCBI Gene IDLOC131017799
GeneID131017799
locus_tag-
NCBI NameLOC131017799
原始查询LOC131017799

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述bifunctional riboflavin kinase/FMN phosphatase-like
产物bifunctional riboflavin kinase/FMN phosphatase-like
ArabidopsisAT4G21470 (FMN/FHY)
riboflavin kinase/FMN hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:828232]
identity=72.4; qcov=0.95; evalue=0; confidence=high
RiceOs10g0464400 (GLN)
-
identity=68.7; qcov=0.957; evalue=0; confidence=high
GOGO:0008531 (riboflavin kinase activity); GO:0009231 (riboflavin biosynthetic process); GO:0009398 (FMN biosynthetic process)
KEGGsmil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
PfamPF00702 (Hydrolase); PF01687 (Flavokinase); PF13419 (HAD_2)
InterPro-
eggNOG-
NRGeneID:131017799

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057802508.1
2 Cytoplasm 细胞质 0.80000 XP_057802511.1
3 Peroxisome 过氧化物酶体 0.60000 XP_057802509.1
4 Nucleus 细胞核 0.00000 XP_057802508.1
5 Chromosome 染色体 0.00000 XP_057802508.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:15127837 CTG C 2bp_deletion frameshift_variant 98 A10,A11,A13,A14,A15,A2,A20,A21,A23,A3,B1,B103,B104,B106,B108,B111,B112,B113,B12,B121,B122,B124,B125,B131,B132,B135,B138,B15,B17,B21,B3,B31,B34,B4,B41,B42,B43,B44,B47,B49,B5,B53,B54,B57,B61,B65,B68,B69,B72,B76,B78,B79,B8,B81,B84,B85,B86,B90,B91,B92,B97,C1,C10,C11,C16,C18,C23,C28,C29,C31,C36,C38,C39,C41,C42,C46,C49,C50,C51,C52,C54,C55,C56,C57,C58,C6,C60,C65,C69,C73,C74,C75,C79,C84,C85,C86,C9,D2
Chr3:15127869 G A EMS_canonical_SNV CDS_variant 1 D10
Chr3:15128040 AC A 1bp_deletion frameshift_variant 3 B35,C82,D6
Chr3:15128040 AC A 1bp_deletion CDS_variant 3 B35,C82,D6
Chr3:15128041 C CT 1bp_insertion frameshift_variant 46 A1,A19,A5,A7,B10,B102,B109,B114,B117,B137,B14,B25,B27,B29,B31,B37,B45,B51,B54,B62,B65,B69,B7,B76,B79,B80,B82,B89,B9,C17,C18,C19,C2,C22,C27,C34,C4,C43,C51,C6,C64,C66,C77,C80,C87,D8
Chr3:15128049 G A EMS_canonical_SNV CDS_variant 1 B108
Chr3:15128470 G A EMS_canonical_SNV CDS_variant 5 A4,B131,B64,C24,C42
Chr3:15129296 C T EMS_canonical_SNV CDS_variant 2 B133,C44
Chr3:15129534 G A EMS_canonical_SNV CDS_variant 1 A9
Chr3:15129554 G A EMS_canonical_SNV CDS_variant 3 B31,C58,C85
Chr3:15130102 G A EMS_canonical_SNV CDS_variant 4 A11,B7,C33,C61
Chr3:15130125 G A EMS_canonical_SNV CDS_variant 1 D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802508.1
412 aa
N
1
206
412
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 44-219 aa PF13419 HAD_2 46-225 aa PF01687 Flavokinase 270-394 aa
XP_057802509.1
397 aa
N
1
198
397
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 29-204 aa PF13419 HAD_2 31-210 aa PF01687 Flavokinase 255-379 aa
XP_057802510.1
397 aa
N
1
198
397
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 29-204 aa PF13419 HAD_2 31-210 aa PF01687 Flavokinase 255-379 aa
XP_057802511.1
380 aa
N
1
190
380
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 12-187 aa PF13419 HAD_2 14-193 aa PF01687 Flavokinase 238-362 aa
XP_057802512.1
380 aa
N
1
190
380
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 12-187 aa PF13419 HAD_2 14-193 aa PF01687 Flavokinase 238-362 aa
XP_057802513.1
397 aa
N
1
198
397
Hydrolase
HAD_2
Flavokinase
C
PF00702 Hydrolase 29-204 aa PF13419 HAD_2 31-210 aa PF01687 Flavokinase 255-379 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802508.1 Pfam PF00702 Hydrolase Domain 44 219 1.4e-25 91.5 haloacid dehalogenase-like hydrolase
XP_057802508.1 Pfam PF13419 HAD_2 Family 46 225 4.9e-27 95.8 Haloacid dehalogenase-like hydrolase
XP_057802508.1 Pfam PF01687 Flavokinase Domain 270 394 7e-35 120.6 Riboflavin kinase
XP_057802509.1 Pfam PF00702 Hydrolase Domain 29 204 1.3e-25 91.6 haloacid dehalogenase-like hydrolase
XP_057802509.1 Pfam PF13419 HAD_2 Family 31 210 4.5e-27 95.9 Haloacid dehalogenase-like hydrolase
XP_057802509.1 Pfam PF01687 Flavokinase Domain 255 379 6.7e-35 120.7 Riboflavin kinase
XP_057802510.1 Pfam PF00702 Hydrolase Domain 29 204 1.3e-25 91.6 haloacid dehalogenase-like hydrolase
XP_057802510.1 Pfam PF13419 HAD_2 Family 31 210 4.5e-27 95.9 Haloacid dehalogenase-like hydrolase
XP_057802510.1 Pfam PF01687 Flavokinase Domain 255 379 6.7e-35 120.7 Riboflavin kinase
XP_057802511.1 Pfam PF00702 Hydrolase Domain 12 187 1.2e-25 91.8 haloacid dehalogenase-like hydrolase
XP_057802511.1 Pfam PF13419 HAD_2 Family 14 193 4e-27 96.1 Haloacid dehalogenase-like hydrolase
XP_057802511.1 Pfam PF01687 Flavokinase Domain 238 362 6.3e-35 120.8 Riboflavin kinase
XP_057802512.1 Pfam PF00702 Hydrolase Domain 12 187 1.2e-25 91.8 haloacid dehalogenase-like hydrolase
XP_057802512.1 Pfam PF13419 HAD_2 Family 14 193 4e-27 96.1 Haloacid dehalogenase-like hydrolase
XP_057802512.1 Pfam PF01687 Flavokinase Domain 238 362 6.3e-35 120.8 Riboflavin kinase
XP_057802513.1 Pfam PF00702 Hydrolase Domain 29 204 1.3e-25 91.6 haloacid dehalogenase-like hydrolase
XP_057802513.1 Pfam PF13419 HAD_2 Family 31 210 4.5e-27 95.9 Haloacid dehalogenase-like hydrolase
XP_057802513.1 Pfam PF01687 Flavokinase Domain 255 379 6.7e-35 120.7 Riboflavin kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057946530.1
ACACAGCTCCTAAACCCCCCTCCCCCCCAAAAAAAAAAGCTCCTAGATGCCTAGAAGGAAAGATCTTTCTTCTTTTGAGAGGGCTGCCATCATCCAATTCCTTCTTGAAGGAAGTCCGAAATGGAAAACGTGCTAGAGACAAGATAGCTGTTGCGAGGCAAAAGTGGAGCTGTTGCCAACAAACGATTAGTCGTATTTGGGCAGCTGCAAATAAACAAAGAGCAAGTGGTGAAATAATTTTTGGACAATTTTTTTGGAGT...
XM_057946528.1
AGCCATTCGATCACTGAGCAGACAGTCGCTACTAGTCTTTGCTCTGCTGTGCTATTCGTTCATGCTATGTCAATGACAAGTTCGTTGAGAAAGCTCGTAACTTGCGTTATCCTTGATTTGGATGGAACCCTTCTTAATACAGATGCCATTGTGCACGATGTCTTGAAGGCTTACTTGGTTAAGTATGGAAAGCAATGGGATGGAAGAGGATCTCATAGAATCGTAGGAAAGACACCCTATGAAGCTGCAACTGCTATTGT...

CDS

6 records

下载 CDS FASTA
LOC131017799
ATGAGAATGTCTGAATTGTTAGACTGTGATTATTATTATTGTGAATCTGTGATTAGTGAATTGGGTCTTTGCTCTGCTGTGCTATTCGTTCATGCTATGTCAATGACAAGTTCGTTGAGAAAGCTCGTAACTTGCGTTATCCTTGATTTGGATGGAACCCTTCTTAATACAGATGCCATTGTGCACGATGTCTTGAAGGCTTACTTGGTTAAGTATGGAAAGCAATGGGATGGAAGAGGATCTCATAGAATCGTAGGAAA...
LOC131017799
ATGAATCATAACTTTTTCAGTCTTTGCTCTGCTGTGCTATTCGTTCATGCTATGTCAATGACAAGTTCGTTGAGAAAGCTCGTAACTTGCGTTATCCTTGATTTGGATGGAACCCTTCTTAATACAGATGCCATTGTGCACGATGTCTTGAAGGCTTACTTGGTTAAGTATGGAAAGCAATGGGATGGAAGAGGATCTCATAGAATCGTAGGAAAGACACCCTATGAAGCTGCAACTGCTATTGTTGAAGATTATGAACT...

Protein

6 records

下载 Protein FASTA
XP_057802508.1
MRMSELLDCDYYYCESVISELGLCSAVLFVHAMSMTSSLRKLVTCVILDLDGTLLNTDAIVHDVLKAYLVKYGKQWDGRGSHRIVGKTPYEAATAIVEDYELPITTNELLSELSPIFSEKWCSIKAQPGAKRLINHLRSHGVLMGLASNSSKENIETKISYHHGWKESFSVIIGGDDVTSAKPSPEIYLEVAKRLKVDGPSCLVVEDSLPGVAAGKAAGMEVVAVPSLPKQSHIFTLADEVINSLLDLQPEKWGLPAFED...
XP_057802509.1
MNHNFFSLCSAVLFVHAMSMTSSLRKLVTCVILDLDGTLLNTDAIVHDVLKAYLVKYGKQWDGRGSHRIVGKTPYEAATAIVEDYELPITTNELLSELSPIFSEKWCSIKAQPGAKRLINHLRSHGVLMGLASNSSKENIETKISYHHGWKESFSVIIGGDDVTSAKPSPEIYLEVAKRLKVDGPSCLVVEDSLPGVAAGKAAGMEVVAVPSLPKQSHIFTLADEVINSLLDLQPEKWGLPAFEDWLEGTLPLEPWYIGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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