当前解析结果
SmilChr03G001336| 统一新 Gene ID | SmilChr03G001336 |
|---|---|
| 名称 | SmilChr03G001336 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15595801 - 15598927 / - |
| NCBI Gene ID | LOC131017831 |
|---|---|
| GeneID | 131017831 |
| locus_tag | - |
| NCBI Name | LOC131017831 |
| 原始查询 | LOC131017831 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=28.7; qcov=0.994; evalue=3.79e-97; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=30.9; qcov=0.959; evalue=7.41e-122; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017831 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802551.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057802551.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802551.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802551.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802551.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15596080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B9,B99,C26,C28 |
Chr3:15596131 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B77,B99,C26,C80 |
Chr3:15596162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr3:15596308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C49,C66 |
Chr3:15596571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B72,C47,C7 |
Chr3:15596968 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C28 |
Chr3:15596968 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C28 |
Chr3:15597048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B72,C27,D5 |
Chr3:15597391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C23 |
Chr3:15597408 |
C |
CT |
1bp_insertion | frameshift_variant | 10 | A3,B107,B124,B32,B8,C33,C42,C49,C57,C61 |
Chr3:15597514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr3:15597563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802551.1PF18052
Rx_N 22-102 aa
PF00931
NB-ARC 195-354 aa
PF23559
WHD_DRP 438-509 aa
PF13855
LRR_8 605-660 aa
PF23598
LRR_14 620-908 aa
PF25019
LRR_R13L1-DRL21 715-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802551.1 |
Pfam | PF18052 |
Rx_N | Domain | 22 | 102 | 9.4e-17 | 61.6 | Rx N-terminal domain |
XP_057802551.1 |
Pfam | PF00931 |
NB-ARC | Domain | 195 | 354 | 1.7e-35 | 122.9 | NB-ARC domain |
XP_057802551.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 438 | 509 | 2.7e-18 | 66.5 | Disease resistance protein Winged helix domain |
XP_057802551.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 605 | 660 | 1e-07 | 32.3 | Leucine rich repeat |
XP_057802551.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 620 | 908 | 6.6e-27 | 94.9 | Leucine-rich repeat region |
XP_057802551.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 715 | 841 | 1.8e-32 | 112.6 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。