Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001386`

染色体: Chr03 坐标: 16374892-16384279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001386`
名称	SmilChr03G001386
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16374892 - 16384279 / `+`

ID 对照

NCBI Gene ID	`LOC131017845`
GeneID	`131017845`
locus_tag	`-`
NCBI Name	`LOC131017845`
原始查询	`LOC131017845`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=24.3; qcov=0.998; evalue=5.14e-50; confidence=weak
Rice	`Os08g0424700` (P0456B03.103) - identity=28.2; qcov=0.915; evalue=2.81e-62; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017845

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057802568.1`
2	Cytoplasm	细胞质	0.20000	`XP_057802568.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802568.1`
4	Nucleus	细胞核	0.00000	`XP_057802568.1`
5	Chromosome	染色体	0.00000	`XP_057802568.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16375023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B106,B28,B68,C43
`Chr3:16375076`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:16375087`	`CTT`	`C`	2bp_deletion	frameshift_variant	6	A1,B27,B51,B58,B73,C73
`Chr3:16375122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr3:16375131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr3:16375173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr3:16375228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B27,B7,B73,C73
`Chr3:16375312`	`TC`	`T`	1bp_deletion	frameshift_variant	4	A5,A9,B58,C31
`Chr3:16375312`	`TC`	`T`	1bp_deletion	CDS_variant	4	A5,A9,B58,C31
`Chr3:16375315`	`AC`	`*`	1bp_deletion	CDS_variant	5	A18,B104,C21,C4,C75
`Chr3:16375404`	`ACG`	`A`	2bp_deletion	frameshift_variant	31	A5,A8,B1,B106,B123,B131,B133,B3,B44,B47,B56,B65,B68,B82,B86,B87,B95,B96,C11,C12,C19,C20,C53,C55,C56,C6,C65,C69,C71,C86,D8
`Chr3:16375407`	`TG`	`T`	1bp_deletion	frameshift_variant	35	A5,A8,B1,B104,B106,B123,B131,B133,B3,B44,B47,B56,B65,B68,B82,B86,B87,B95,B96,C11,C12,C19,C20,C4,C47,C53,C55,C56,C6,C65,C69,C71,C75,C86,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802568.1

874 aa

437

874

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 153-352 aa PF23559 WHD_DRP 429-499 aa PF23598 LRR_14 570-768 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802568.1`	Pfam	`PF00931`	NB-ARC	Domain	153	352	4.5e-27	95.4	NB-ARC domain
`XP_057802568.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	499	2.4e-20	73.1	Disease resistance protein Winged helix domain
`XP_057802568.1`	Pfam	`PF23598`	LRR_14	Repeat	570	768	2.1e-17	63.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009099879.1
ATCATCGTAATATCCACTATCTCTCTCTCTCTCATACTTTCCCTTTCTGGGCATCCTCCATTTGATTTCCAAGATCTTCTAGTTTGCTCAAGTTGGATTAGTTGCTTGTATGTACATGAGATGGCTTATGCCGCTCTTGTTTCGCTTGCACAAACCATAAGCCAAATCCTAAATCACGATCACACTCCCACCACTCTTCCTCTACATCAAGAAATCATCGCATCCATCCTCGATCACATCGTTGACTTGAAATCATTTCT...

XM_057946585.1
ATCATCGTAATATCCACTATCTCTCTCTCTCTCATACTTTCCCTTTCTGGGCATCCTCCATTTGATTTCCAAGATCTTCTAGTTTGCTCAAGTTGGATTAGTTGCTTGTATGTACATGAGATGGCTTATGCCGCTCTTGTTTCGCTTGCACAAACCATAAGCCAAATCCTAAATCACGATCACACTCCCACCACTCTTCCTCTACATCAAGAAATCATCGCATCCATCCTCGATCACATCGTTGACTTGAAATCATTTCT...

CDS

1 records

下载 CDS FASTA

LOC131017845
ATGGCTTATGCCGCTCTTGTTTCGCTTGCACAAACCATAAGCCAAATCCTAAATCACGATCACACTCCCACCACTCTTCCTCTACATCAAGAAATCATCGCATCCATCCTCGATCACATCGTTGACTTGAAATCATTTCTCGAAGACCTACCACAGATAGTCAACAGTTTGGAAGGCCAAATCAGGGATGTAGCAAATGCAGCAGAAGATGCTATCGAATATCTTCTGTGTGAAGAAAATCAATCAGATTGTGGATCGAG...

Protein

1 records

下载 Protein FASTA

XP_057802568.1
MAYAALVSLAQTISQILNHDHTPTTLPLHQEIIASILDHIVDLKSFLEDLPQIVNSLEGQIRDVANAAEDAIEYLLCEENQSDCGSSNIDRLKEVAEKFMSTAGDVADYVRSNYSVKKGRRLSDSCVVNSSRAPTSENLVVGFYLTKMRFRLLLRPSKLQVITIVGKAGSGKTTLAKLVYTDASDFHYSDRVSRIHTSIVKHFDIRGWVTVPQDYSVGSIASDLLASIRGISDVQRITNKDEIGNRLTDLRYLLASMNGI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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