当前解析结果
SmilChr03G001397| 统一新 Gene ID | SmilChr03G001397 |
|---|---|
| 名称 | SmilChr03G001397 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16589336 - 16595237 / + |
| NCBI Gene ID | LOC131017847 |
|---|---|
| GeneID | 131017847 |
| locus_tag | - |
| NCBI Name | LOC131017847 |
| 原始查询 | LOC131017847 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G43470 (RPP8)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=28.7; qcov=1.04; evalue=2.46e-81; confidence=low |
| Rice | Os10g0183000 (OsLSR)- identity=29.6; qcov=1.01; evalue=2.67e-84; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017847 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057802571.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057802571.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802571.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802571.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802571.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16590494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:16590608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,C2,C23 |
Chr3:16590952 |
G |
GCA |
2bp_insertion | frameshift_variant | 29 | A6,A8,A9,B106,B114,B123,B16,B25,B30,B44,B70,B72,B86,B91,C15,C2,C28,C33,C41,C48,C49,C5,C51,C56,C64,C65,C66,C75,C86 |
Chr3:16591022 |
C |
T |
EMS_canonical_SNV | stop_gained | 40 | A16,A6,A7,A8,A9,B10,B103,B106,B114,B138,B16,B25,B3,B30,B34,B38,B39,B44,B45,B70,B72,B86,B91,C15,C2,C24,C28,C33,C35,C36,C47,C5,C51,C52,C56,C65,C66,C75,C78,C86 |
Chr3:16591067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr3:16591099 |
GA |
G |
1bp_deletion | frameshift_variant | 11 | A16,A9,B114,B16,B30,B70,B72,B86,C2,C56,C78 |
Chr3:16591169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr3:16591243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C62,C7 |
Chr3:16591250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,B48 |
Chr3:16591261 |
CA |
C |
1bp_deletion | frameshift_variant | 4 | A1,C16,C62,C7 |
Chr3:16591261 |
CA |
C |
1bp_deletion | CDS_variant | 4 | A1,C16,C62,C7 |
Chr3:16591280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,C16,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802571.1PF00931
NB-ARC 160-326 aa
PF23559
WHD_DRP 407-479 aa
PF23598
LRR_14 534-817 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802571.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 326 | 5.4e-44 | 150.5 | NB-ARC domain |
XP_057802571.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 407 | 479 | 4.5e-22 | 78.6 | Disease resistance protein Winged helix domain |
XP_057802571.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 534 | 817 | 3.1e-24 | 86.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。