Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001410`

染色体: Chr03 坐标: 16741844-16760432 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001410`
名称	SmilChr03G001410
描述	protein trichome birefringence-like 24
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16741844 - 16760432 / `+`

ID 对照

NCBI Gene ID	`LOC131017885`
GeneID	`131017885`
locus_tag	`-`
NCBI Name	`LOC131017885`
原始查询	`LOC131017885`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 24
产物	protein trichome birefringence-like 24
Arabidopsis	`AT4G11090` (TBL23) TRICHOME BIREFRINGENCE-LIKE 23 [Source:NCBI gene (formerly Entrezgene);Acc:826710] identity=54.4; qcov=0.934; evalue=1.9e-151; confidence=high
Rice	`Os06g0524400` (OsTBL49) - identity=53.4; qcov=0.926; evalue=6.79e-147; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131017885

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057802601.1`
2	Vacuole	液泡	0.20000	`XP_057802602.1`
3	Nucleus	细胞核	0.00000	`XP_057802601.1`
4	Chromosome	染色体	0.00000	`XP_057802601.1`
5	Centromere	着丝粒	0.00000	`XP_057802601.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16742404`	`C`	`CT`	1bp_insertion	frameshift_variant	34	A10,A13,A16,A18,A2,A20,A21,B106,B108,B11,B113,B12,B121,B136,B139,B26,B34,B38,B39,B45,B48,B52,B61,B66,B73,B86,C11,C36,C37,C5,C51,C65,C69,D5
`Chr3:16742442`	`A`	`AT`	1bp_insertion	frameshift_variant	8	A1,B129,B132,B2,B85,B98,C12,C37
`Chr3:16743207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:16743272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,B63
`Chr3:16758439`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr3:16758558`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C24
`Chr3:16758558`	`GC`	`G`	1bp_deletion	CDS_variant	1	C24
`Chr3:16758627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:16758648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,B48
`Chr3:16758656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr3:16758659`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D10
`Chr3:16758659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802601.1

430 aa

215

430

PMR5N

PC-Esterase

PF14416 PMR5N 82-134 aa PF13839 PC-Esterase 135-426 aa

XP_057802602.1

392 aa

196

392

PMR5N

PC-Esterase

PF14416 PMR5N 44-96 aa PF13839 PC-Esterase 97-388 aa

XP_057802603.1

392 aa

196

392

PMR5N

PC-Esterase

PF14416 PMR5N 44-96 aa PF13839 PC-Esterase 97-388 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802601.1`	Pfam	`PF14416`	PMR5N	Domain	82	134	6.4e-24	84.8	PMR5 N terminal Domain
`XP_057802601.1`	Pfam	`PF13839`	PC-Esterase	Family	135	426	1.5e-83	281.7	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057802602.1`	Pfam	`PF14416`	PMR5N	Domain	44	96	2.1e-23	83.1	PMR5 N terminal Domain
`XP_057802602.1`	Pfam	`PF13839`	PC-Esterase	Family	97	388	1.2e-83	282.1	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057802603.1`	Pfam	`PF14416`	PMR5N	Domain	44	96	2.1e-23	83.1	PMR5 N terminal Domain
`XP_057802603.1`	Pfam	`PF13839`	PC-Esterase	Family	97	388	1.2e-83	282.1	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057946619.1
AGATCTAAAATCAAGTACGGTACAGTACAACAGCCCCTCATTTCCTTGCTCTGCAACACCAACTTTCGGCCAAGACCATGCTTCTCCCTAAGTAGTCATTCAGCTGTCTGCACCATCACTTCAATTCCCTCATGTATAGAACTCAGCTACTCAAGTAATAGCCAACAAAAGTCATCATTCCCTTCATTTTACACTAACACTCTGCGGGGAAAGACAAAGAGTTTCTTTCAACTCAAATCTGGACTCAAGAGCTTCTATCC...

XM_057946620.1
AGATCTAAAATCAAGTACGGTACAGTACAACAGCCCCTCATTTCCTTGCTCTGCAACACCAACTTTCGGCCAAGACCATGCTTCTCCCTAAGTAGTCATTCAGCTGTCTGCACCATCACTTCAATTCCCTCATGTATAGAACTCAGCTACTCAAGTAATAGCCAACAAAAGTCATCATTCCCTTCATTTTACACTAACACTCTGCGGGGAAAGACAAAGAGTTTCTTTCAACTCAAATCTGGACTCAAGAGCAGCCTACC...

CDS

3 records

下载 CDS FASTA

LOC131017885
ATGCTTATGTACAACAAATCCTCTGATTCTTCCCCAGTTTTAAACTCCCCTTTTCTCCAAAACACGATTTCTGGTGATTCTGTGGGAAATACAGATCAAATTTCCAGCAAAGAGTCCATAGGCAGTGAAGAAAAGTGCAATCTTTTCATAGGGGAGTGGGTGTATCAAGCAGAACCTCTCTACACAAATAGTAGCTGCAGCTTCATTGAGGACCACCAGAATTGTATGAAAAATGGGCGGCCCAACTCGGATTATCTTTA...

Protein

3 records

下载 Protein FASTA

XP_057802601.1
MVKKVEHCHWSSWWRSPQRNNYFLIKLGASALLVALAFMLIYNKSSDSSAVLSAPFLQNTISADSVGNTDQISSKESIGSEEKCNLFIGEWVYQAEPLYTNSSCSFIEDHQNCMKNGRPDSDYLYWRWKPRDCELGRLDPGRFLELMRNKSWAFIGDSISRNHVHSILCGLSMVESPIEVYHDESYKSRRWLFPLHNFTLSAVWAPFLTYAATFEDNNGVSTSDIQLHLDVLDKNWTEQYKSHDYVMVSVGKWFTKTAIY...

XP_057802602.1
MLMYNKSSDSSPVLNSPFLQNTISGDSVGNTDQISSKESIGSEEKCNLFIGEWVYQAEPLYTNSSCSFIEDHQNCMKNGRPNSDYLYWRWKPRDCELGRLDPGRFLELMRNKSWAFIGDSISRNHVHSILCGLSMVESPIEVYHDESYKSRRWLFPLHNFTLSAVWAPFLTYAATFEDNNGVSTSDIQLHLDVLDKNWTEQYKSHDYVMVSVGKWFTKTAIYYENNTVLGCYNCTNSDLTKLRFNFAYRRAMRTVFDYII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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