Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001431`

染色体: Chr03 坐标: 16973184-16979456 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001431`
名称	SmilChr03G001431
描述	uncharacterized SmilChr03G001431
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	16973184 - 16979456 / `-`

ID 对照

NCBI Gene ID	`LOC131017904`
GeneID	`131017904`
locus_tag	`-`
NCBI Name	`LOC131017904`
原始查询	`LOC131017904`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA primase POLA3 [Source:NCBI gene (formerly Entrezgene);Acc:834193]; symbol=POLA3; hit=AT5G41880; species=arabidopsis; confidence=high
产物	DNA primase POLA3 [Source:NCBI gene (formerly Entrezgene);Acc:834193]; symbol=POLA3; hit=AT5G41880; species=arabidopsis; confidence=high
Arabidopsis	`AT5G41880` (POLA3) DNA primase POLA3 [Source:NCBI gene (formerly Entrezgene);Acc:834193] identity=64.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0358200` - identity=87.1; qcov=0.188; evalue=2.4e-48; confidence=weak
GO	GO:0003896 (GO:0003896); GO:0005658 (alpha DNA polymerase:primase complex); GO:0006269 (DNA replication, synthesis of primer)
KEGG	smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage))
Pfam	PF01896 (DNA_primase_S)
InterPro	-
eggNOG	-
NR	GeneID:131017904

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802625.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802625.1`
3	Cytosol	细胞质基质	0.60000	`XP_057802625.1`
4	Nucleoplasm	核质	0.20000	`XP_057802625.1`
5	Chromosome	染色体	0.00000	`XP_057802625.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:16975039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B44,B65
`Chr3:16975206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr3:16975987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B100,B123,B29,B72
`Chr3:16976107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B71,B92
`Chr3:16977346`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B71
`Chr3:16977346`	`TA`	`T`	1bp_deletion	CDS_variant	1	B71
`Chr3:16978141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B3,B67
`Chr3:16979052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802625.1

452 aa

226

452

DNA_primase_S

PF01896 DNA_primase_S 141-372 aa

XP_057802626.1

452 aa

226

452

DNA_primase_S

PF01896 DNA_primase_S 141-372 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802625.1`	Pfam	`PF01896`	DNA_primase_S	Family	141	372	2.3e-55	188.1	DNA primase small subunit
`XP_057802626.1`	Pfam	`PF01896`	DNA_primase_S	Family	141	372	2.3e-55	188.1	DNA primase small subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057946643.1
ATCTCCAACTGAATAAATTTAATTCGATTCATTTTTTCCCGCCAAATCCCCACCCCTAGGTCTTTATTTTTCCCGCCATTTCTCAATTCCTCATTGGCTTTTGCTGCCTGCACCGTCTTCCTACAACACTCCGATCGTTCAATTCTAGTATCGTAGGAAACGCTGAATTGTTCGGAAATGGTCAGAGAAGAAGTTGAGAATACGCGTACAGACATGGTAATCGACGGGGTGGAAAGAGCGCACAGGCCAAACAATGAAAT...

XM_057946642.1
TCGATTCATTTTTTCCCGCCAAATCCCCACCCCTAGGTCTTTATTTTTCCCGCCATTTCTCAATTCCTCATTGGCTTTTGCTGCCTGCACCGTCTTCCTACAACACTCCGATCGTTCAATTCTAGTATCGTATCCTGCAATTCTCCAGAATTCACGATTGTTTTGGGCTTAGGGTTTTCAGCAGGTTTTTTCACTCCGATTATCCCCCTTTTACCTTAACTCCAGTAATTCTAGGTAGGAAACGCTGAATTGTTCGGAAA...

CDS

2 records

下载 CDS FASTA

LOC131017904
ATGGTCAGAGAAGAAGTTGAGAATACGCGTACAGACATGGTAATCGACGGGGTGGAAAGAGCGCACAGGCCAAACAATGAAATTCCTGATGGATTCAACTATAACTATCTCAAGATTTACTACGGGAAGTTTTTTCCGTATGCTGATATGCACAAATGGATGTCATATGGAAATGATGGAAAACATCCAGGCTGTGATCACTCTTACTTTGGGAGAAGAGAGTTTTCATTCACCTTAGAAAATGATATATACTTGCGGTT...

Protein

2 records

下载 Protein FASTA

XP_057802625.1
MVREEVENTRTDMVIDGVERAHRPNNEIPDGFNYNYLKIYYGKFFPYADMHKWMSYGNDGKHPGCDHSYFGRREFSFTLENDIYLRFQSFNNVADLEKAIKEKCPFKIDIGPVYSVDPAKRHAYAQSGDNVFSPVERELIFDIDISDYDDVRFCCSGADVCSACWPLMTVAIKIIDSALREDFGFNHILWVYSGRRGVHCWVCDGKARRLNNEQRAAIAEYLHVHKGNENSLKKVTLVGQTFHPFLGRSAEVVKEFFEEK...

XP_057802626.1
MVREEVENTRTDMVIDGVERAHRPNNEIPDGFNYNYLKIYYGKFFPYADMHKWMSYGNDGKHPGCDHSYFGRREFSFTLENDIYLRFQSFNNVADLEKAIKEKCPFKIDIGPVYSVDPAKRHAYAQSGDNVFSPVERELIFDIDISDYDDVRFCCSGADVCSACWPLMTVAIKIIDSALREDFGFNHILWVYSGRRGVHCWVCDGKARRLNNEQRAAIAEYLHVHKGNENSLKKVTLVGQTFHPFLGRSAEVVKEFFEEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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