当前解析结果
SmilChr03G001432| 统一新 Gene ID | SmilChr03G001432 |
|---|---|
| 名称 | SmilChr03G001432 |
| 描述 | ethylene-responsive transcription factor ERF061-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 16987485 - 16988787 / - |
| NCBI Gene ID | LOC131017905 |
|---|---|
| GeneID | 131017905 |
| locus_tag | - |
| NCBI Name | LOC131017905 |
| 原始查询 | LOC131017905 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ERF061-like |
| 产物 | ethylene-responsive transcription factor ERF061-like |
| Arabidopsis | AT1G64380 (AT1G64380)Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842745] identity=46; qcov=1.18; evalue=5.72e-63; confidence=high |
| Rice | Os05g0572000 (OsERF#052)- identity=42.5; qcov=0.993; evalue=1.34e-50; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017905 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802627.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057802627.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057802627.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057802627.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057802627.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:16987716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr3:16987781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:16987783 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B105,B133 |
Chr3:16987868 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,B87 |
Chr3:16987933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B87,C32,C68 |
Chr3:16987941 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | B103,B108,B128,B81,B97,C31,C36,C55,C57 |
Chr3:16987987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C13 |
Chr3:16987994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,C22 |
Chr3:16988068 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr3:16988098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,B83,C59 |
Chr3:16988104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B133 |
Chr3:16988122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B100,B126,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802627.1PF00847
AP2 97-146 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802627.1 |
Pfam | PF00847 |
AP2 | Domain | 97 | 146 | 6.6e-14 | 52.7 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。