Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001486`

染色体: Chr03 坐标: 17915486-17922476 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001486`
名称	SmilChr03G001486
描述	putative late blight resistance protein homolog R1B-16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	17915486 - 17922476 / `-`

ID 对照

NCBI Gene ID	`LOC131017947`
GeneID	`131017947`
locus_tag	`-`
NCBI Name	`LOC131017947`
原始查询	`LOC131017947`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-16
产物	putative late blight resistance protein homolog R1B-16
Arabidopsis	`AT5G48620` (AT5G48620) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834919] identity=29.6; qcov=1.04; evalue=5.69e-97; confidence=low
Rice	`Os06g0158300` (KMK0024M20.32) - identity=26.5; qcov=1.01; evalue=9.91e-73; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131017947

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802689.1`
2	Nucleus	细胞核	0.00000	`XP_057802689.1`
3	Chromosome	染色体	0.00000	`XP_057802689.1`
4	Centromere	着丝粒	0.00000	`XP_057802689.1`
5	Chromatin	染色质	0.00000	`XP_057802689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:17917086`	`AGG`	`*`	2bp_deletion	CDS_variant	5	B115,B21,B23,B93,C49
`Chr3:17917190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,D2
`Chr3:17917331`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr3:17917380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B91,C39,D10
`Chr3:17917383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr3:17917417`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B112
`Chr3:17917417`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B112
`Chr3:17917451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,C1
`Chr3:17917452`	`CCA`	`C`	2bp_deletion	frameshift_variant	69	A10,A13,A21,A4,A7,B1,B105,B108,B115,B118,B122,B124,B131,B133,B134,B136,B137,B140,B24,B26,B27,B32,B36,B42,B48,B50,B52,B55,B58,B6,B62,B70,B8,B80,B88,B89,B91,B94,B99,C10,C15,C17,C21,C25,C28,C29,C34,C38,C42,C44,C46,C50,C51,C55,C64,C66,C7,C71,C73,C76,C79,C8,C82,C87,D10,D11,D4,D8,D9
`Chr3:17917456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,C1
`Chr3:17917457`	`TAA`	`T`	2bp_deletion	frameshift_variant	68	A10,A13,A21,A4,A7,B1,B105,B108,B115,B118,B122,B124,B131,B133,B134,B136,B137,B140,B24,B26,B27,B32,B36,B42,B48,B50,B52,B55,B58,B6,B62,B70,B8,B80,B88,B91,B94,B99,C10,C15,C17,C21,C25,C28,C29,C34,C38,C42,C44,C46,C50,C51,C55,C64,C66,C7,C71,C73,C76,C79,C8,C82,C87,D10,D11,D4,D8,D9
`Chr3:17917470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802689.1

876 aa

438

876

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-91 aa PF00931 NB-ARC 154-320 aa PF23559 WHD_DRP 412-482 aa PF23598 LRR_14 534-848 aa

XP_057802690.1

876 aa

438

876

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-91 aa PF00931 NB-ARC 154-320 aa PF23559 WHD_DRP 412-482 aa PF23598 LRR_14 534-848 aa

XP_057802692.1

876 aa

438

876

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-91 aa PF00931 NB-ARC 154-320 aa PF23559 WHD_DRP 412-482 aa PF23598 LRR_14 534-848 aa

XP_057802693.1

876 aa

438

876

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-91 aa PF00931 NB-ARC 154-320 aa PF23559 WHD_DRP 412-482 aa PF23598 LRR_14 534-848 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802689.1`	Pfam	`PF18052`	Rx_N	Domain	5	91	3.5e-18	66.2	Rx N-terminal domain
`XP_057802689.1`	Pfam	`PF00931`	NB-ARC	Domain	154	320	1.4e-42	145.9	NB-ARC domain
`XP_057802689.1`	Pfam	`PF23559`	WHD_DRP	Domain	412	482	4e-20	72.4	Disease resistance protein Winged helix domain
`XP_057802689.1`	Pfam	`PF23598`	LRR_14	Repeat	534	848	1.5e-13	50.9	Leucine-rich repeat region
`XP_057802690.1`	Pfam	`PF18052`	Rx_N	Domain	5	91	3.5e-18	66.2	Rx N-terminal domain
`XP_057802690.1`	Pfam	`PF00931`	NB-ARC	Domain	154	320	1.4e-42	145.9	NB-ARC domain
`XP_057802690.1`	Pfam	`PF23559`	WHD_DRP	Domain	412	482	4e-20	72.4	Disease resistance protein Winged helix domain
`XP_057802690.1`	Pfam	`PF23598`	LRR_14	Repeat	534	848	1.5e-13	50.9	Leucine-rich repeat region
`XP_057802692.1`	Pfam	`PF18052`	Rx_N	Domain	5	91	3.5e-18	66.2	Rx N-terminal domain
`XP_057802692.1`	Pfam	`PF00931`	NB-ARC	Domain	154	320	1.4e-42	145.9	NB-ARC domain
`XP_057802692.1`	Pfam	`PF23559`	WHD_DRP	Domain	412	482	4e-20	72.4	Disease resistance protein Winged helix domain
`XP_057802692.1`	Pfam	`PF23598`	LRR_14	Repeat	534	848	1.5e-13	50.9	Leucine-rich repeat region
`XP_057802693.1`	Pfam	`PF18052`	Rx_N	Domain	5	91	3.5e-18	66.2	Rx N-terminal domain
`XP_057802693.1`	Pfam	`PF00931`	NB-ARC	Domain	154	320	1.4e-42	145.9	NB-ARC domain
`XP_057802693.1`	Pfam	`PF23559`	WHD_DRP	Domain	412	482	4e-20	72.4	Disease resistance protein Winged helix domain
`XP_057802693.1`	Pfam	`PF23598`	LRR_14	Repeat	534	848	1.5e-13	50.9	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057946710.1
GACTGCTATCTCATGGAGAGATTTGTGATTTCGACTACTCGAGTTAGTGGCCGACAAAGGAAGGACCACTAATAATAACTACATAAAAACAAAAACAAAAAGTCCCCTTTGCTTTGATTTTTCTTCTTATTTTCTGACCAAAAAGCAAAAAGACGAAACTCGAGTCAATTAGACCCAAGCCATCTCTGAAACTATTCAATTGGAACCAATCAGGTTGAACTTTTCTCATAGCTAGTAAATATTTTTGTAACAAATCTAGT...

XM_057946707.1
GACTGCTATCTCATGGAGAGATTTGTGATTTCGACTACTCGAGTTAGTGGCCGACAAAGGAAGGACCACTAATAATAACTACATAAAAACAAAAACAAAAAGTCCCCTTTGCTTTGATTTTTCTTCTTATTTTCTGACCAAAAAGCAAAAAGACGAAACTCGAGTCAATTAGACCCAAGCCATCTCTGAAACTATTCAATTGGAACCAATCAGGTTGAACTTTTCTCATAGCTAGTAAATATTTTTGTAACAAATCTAGT...

CDS

4 records

下载 CDS FASTA

LOC131017947
ATGGCGGATGCAGCAGTGGAGTTCCTGCTGAATAACCTCAAGGAGCTACTGCTTTACCACTCAAAGCTAATCACAGAGACGAGGAGCCAGATCGAGAGCTTGGAGAAGGATCTCCGCGTCTTCAAAGCCTTTCTCAAGGACACCATGAAGAAGCGGAGAGAGGATGAGCACACGAAGGCGCTGGTGCAGAACATTCGCGACGTGGTGTATGAGGTGGAAGATGTGGTCGACCTCTTTGTAACCAAGGCTTTGGAGAAAAA...

Protein

4 records

下载 Protein FASTA

XP_057802689.1
MADAAVEFLLNNLKELLLYHSKLITETRSQIESLEKDLRVFKAFLKDTMKKRREDEHTKALVQNIRDVVYEVEDVVDLFVTKALEKKANANYLRFWKPSYDLHTIGVKVEEVKTKVERARIDFANLRIDHEDRSDKPQTWPLRERDVVGFVDVTEELIHQLTEKTDYLDVVSLIGMFGLGKTTVARKIFNDPAIIYEFPVRIWLHISQEFSNKEVFLAILKEFTAITKDIRQRDEQELGRDVASRLEKVCFLIVMDDVWN...

XP_057802690.1
MADAAVEFLLNNLKELLLYHSKLITETRSQIESLEKDLRVFKAFLKDTMKKRREDEHTKALVQNIRDVVYEVEDVVDLFVTKALEKKANANYLRFWKPSYDLHTIGVKVEEVKTKVERARIDFANLRIDHEDRSDKPQTWPLRERDVVGFVDVTEELIHQLTEKTDYLDVVSLIGMFGLGKTTVARKIFNDPAIIYEFPVRIWLHISQEFSNKEVFLAILKEFTAITKDIRQRDEQELGRDVASRLEKVCFLIVMDDVWN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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