当前解析结果
SmilChr01G000494| 统一新 Gene ID | SmilChr01G000494 |
|---|---|
| 名称 | SmilChr01G000494 |
| 描述 | uncharacterized SmilChr01G000494 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 10073513 - 10076671 / + |
| NCBI Gene ID | LOC131017948 |
|---|---|
| GeneID | 131017948 |
| locus_tag | - |
| NCBI Name | LOC131017948 |
| 原始查询 | LOC131017948 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=low |
| 产物 | hit=Os08g0202300; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=26.7; qcov=0.143; evalue=7.28e-12; confidence=weak |
| Rice | Os08g0202300- identity=31.7; qcov=0.36; evalue=2.54e-60; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017948 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057802722.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057802722.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802722.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802722.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802722.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:10073522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:10073534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr1:10073560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:10073571 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr1:10073571 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B74 |
Chr1:10073579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B97,C41 |
Chr1:10073617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:10073623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B62,B70,B90,C29 |
Chr1:10073624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,D9 |
Chr1:10073629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B2,B90,C87 |
Chr1:10073631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,C87 |
Chr1:10073635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B132,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802722.1PF00078
RVT_1 111-270 aa
PF17919
RT_RNaseH_2 333-431 aa
PF17917
RT_RNaseH 361-460 aa
PF13456
RVT_3 496-614 aa
PF17921
Integrase_H2C2 703-754 aa
PF00665
rve 771-867 aa
PF31073
DUF8803 990-1051 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802722.1 |
Pfam | PF00078 |
RVT_1 | Domain | 111 | 270 | 8.4e-33 | 114.7 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057802722.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 333 | 431 | 1.1e-20 | 74.2 | RNase H-like domain found in reverse transcriptase |
XP_057802722.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 361 | 460 | 1.4e-15 | 58.1 | RNase H-like domain found in reverse transcriptase |
XP_057802722.1 |
Pfam | PF13456 |
RVT_3 | Domain | 496 | 614 | 2.2e-15 | 57.4 | Reverse transcriptase-like |
XP_057802722.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 703 | 754 | 2.5e-10 | 41.1 | Integrase zinc binding domain |
XP_057802722.1 |
Pfam | PF00665 |
rve | Domain | 771 | 867 | 6.3e-18 | 65.6 | Integrase core domain |
XP_057802722.1 |
Pfam | PF31073 |
DUF8803 | Domain | 990 | 1051 | 5.6e-25 | 87.7 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。