当前解析结果
SmilChr03G001495| 统一新 Gene ID | SmilChr03G001495 |
|---|---|
| 名称 | SmilChr03G001495 |
| 描述 | probable inactive receptor kinase At4g23740 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18238920 - 18242405 / - |
| NCBI Gene ID | LOC131017960 |
|---|---|
| GeneID | 131017960 |
| locus_tag | - |
| NCBI Name | LOC131017960 |
| 原始查询 | LOC131017960 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase At4g23740 |
| 产物 | probable inactive receptor kinase At4g23740 |
| Arabidopsis | AT4G23740 (AT4G23740)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828474] identity=64.1; qcov=0.96; evalue=0; confidence=high |
| Rice | Os01g0223600- identity=56.1; qcov=0.951; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017960 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802699.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802699.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802699.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802699.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802699.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18239178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B68,C41,C81,D2 |
Chr3:18239199 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | A22 |
Chr3:18239199 |
TG |
T |
1bp_deletion | CDS_variant | 1 | A22 |
Chr3:18239235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr3:18239263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr3:18239292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:18239373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B49,B87,C4,C82,D5 |
Chr3:18239451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B49,B87,C4,C82,D5 |
Chr3:18239628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:18239645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr3:18240809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr3:18241202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802699.1PF08263
LRRNT_2 32-70 aa
PF00560
LRR_1 101-122 aa
PF00560
LRR_1 124-144 aa
PF00560
LRR_1 148-170 aa
PF00560
LRR_1 194-214 aa
PF00069
Pkinase 335-597 aa
PF07714
PK_Tyr_Ser-Thr 335-599 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802699.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 32 | 70 | 1.8e-07 | 32.0 | Leucine rich repeat N-terminal domain |
XP_057802699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 101 | 122 | 2.9e-12 | 44.9 | Leucine Rich Repeat |
XP_057802699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 124 | 144 | 2.9e-12 | 44.9 | Leucine Rich Repeat |
XP_057802699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 148 | 170 | 2.9e-12 | 44.9 | Leucine Rich Repeat |
XP_057802699.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 194 | 214 | 2.9e-12 | 44.9 | Leucine Rich Repeat |
XP_057802699.1 |
Pfam | PF00069 |
Pkinase | Domain | 335 | 597 | 1.8e-31 | 110.2 | Protein kinase domain |
XP_057802699.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 335 | 599 | 5.5e-32 | 111.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。