Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001523`

染色体: Chr03 坐标: 18670912-18673632 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001523`
名称	SmilChr03G001523
描述	putative wall-associated receptor kinase-like 16
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	18670912 - 18673632 / `-`

ID 对照

NCBI Gene ID	`LOC131017986`
GeneID	`131017986`
locus_tag	`-`
NCBI Name	`LOC131017986`
原始查询	`LOC131017986`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative wall-associated receptor kinase-like 16
产物	putative wall-associated receptor kinase-like 16
Arabidopsis	`AT1G21270` (WAK2) wall-associated kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:838723] identity=43; qcov=0.992; evalue=0; confidence=medium
Rice	`Os02g0111600` (OsWAK11) - identity=43.5; qcov=0.948; evalue=0; confidence=medium
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00008 (EGF); PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF12947 (EGF_3); PF13947 (GUB_WAK_bind)
InterPro	-
eggNOG	-
NR	GeneID:131017986

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057802732.1`
2	Nucleus	细胞核	0.00000	`XP_057802732.1`
3	Chromosome	染色体	0.00000	`XP_057802732.1`
4	Centromere	着丝粒	0.00000	`XP_057802732.1`
5	Chromatin	染色质	0.00000	`XP_057802732.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:18671081`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B38
`Chr3:18671081`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B38
`Chr3:18671102`	`C`	`CA`	1bp_insertion	frameshift_variant	16	A16,A20,A9,B130,B131,B136,B16,B70,B8,B80,C32,C50,C53,C68,D3,D9
`Chr3:18671145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr3:18671248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr3:18671262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:18671333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B140,B22,B23,D1
`Chr3:18671339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B41,B69,B85,C10,C74
`Chr3:18671349`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:18671428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr3:18671430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B66,B9,C39
`Chr3:18671478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B74,B90,B95,C30,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802732.1

764 aa

382

764

GUB_WAK_bind

EGF_CA

EGF

EGF_3

Pkinase

PK_Tyr_Ser-Thr

PF13947 GUB_WAK_bind 41-98 aa PF07645 EGF_CA 303-335 aa PF00008 EGF 307-337 aa PF12947 EGF_3 307-339 aa PF00069 Pkinase 432-698 aa PF07714 PK_Tyr_Ser-Thr 437-702 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802732.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	41	98	4.6e-09	37.2	Wall-associated receptor kinase galacturonan-binding
`XP_057802732.1`	Pfam	`PF07645`	EGF_CA	Domain	303	335	8.8e-08	33.0	Calcium-binding EGF domain
`XP_057802732.1`	Pfam	`PF00008`	EGF	Domain	307	337	6.4e-05	23.9	EGF-like domain
`XP_057802732.1`	Pfam	`PF12947`	EGF_3	Domain	307	339	7.5e-07	30.0	EGF domain
`XP_057802732.1`	Pfam	`PF00069`	Pkinase	Domain	432	698	6.2e-46	157.6	Protein kinase domain
`XP_057802732.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	437	702	2.6e-46	158.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946749.1
TGACGCTGCAAATGGACAACTATGTGAAAGACTCCGACGACGTCCATTGACTTCACTTCACACAAATTATGTCTACACTTTCTATATATTGAGTCGTTGGTTTATCAGAAATCAGAATGATGGTATTTGAGAAATTCAACAATATGCAGGCCTCAATTCTGCTCATCATCTTCATCTTGGCCTCCACTCCAACACTACTACTCTCATCACAGAATTTCCCCTTAGCTAAGCTAAACTGCAGCGATCATTGCGGTGATATA...

CDS

1 records

下载 CDS FASTA

LOC131017986
ATGATGGTATTTGAGAAATTCAACAATATGCAGGCCTCAATTCTGCTCATCATCTTCATCTTGGCCTCCACTCCAACACTACTACTCTCATCACAGAATTTCCCCTTAGCTAAGCTAAACTGCAGCGATCATTGCGGTGATATAAGCATCCCATTCCCTTTCGGCACCACAGAGGAGTGCAGCATGAGCAGCAATTTCAGGGTCACCTGCAACCACACAGCCATCGATCCCCCAAAGCTCTTCTGGGAGGACTCGTCAAT...

Protein

1 records

下载 Protein FASTA

XP_057802732.1
MMVFEKFNNMQASILLIIFILASTPTLLLSSQNFPLAKLNCSDHCGDISIPFPFGTTEECSMSSNFRVTCNHTAIDPPKLFWEDSSIEITNISTHGQIKLLQSVAYDCYYSNGSRALNFSTWIELPTYFTVNNTANKFTIVGCNALAFVSGISRLGRSFKTGCTAMCSSEADLTEGECAGMGCCQTPIPRDLWRVEVEADSYSNYTDVWDFNNCSYAFVAEQTAFNFSKENLKNLYSIDTLPMVVDWVVGNQTCEELAGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器