当前解析结果
SmilChr03G001524| 统一新 Gene ID | SmilChr03G001524 |
|---|---|
| 名称 | SmilChr03G001524 |
| 描述 | putative wall-associated receptor kinase-like 16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 18756055 - 18763598 / - |
| NCBI Gene ID | LOC131017987 |
|---|---|
| GeneID | 131017987 |
| locus_tag | - |
| NCBI Name | LOC131017987 |
| 原始查询 | LOC131017987 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative wall-associated receptor kinase-like 16 |
| 产物 | putative wall-associated receptor kinase-like 16 |
| Arabidopsis | AT1G21240 (WAK3)wall associated kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:838719] identity=44.7; qcov=1.02; evalue=0; confidence=medium |
| Rice | Os02g0111600 (OsWAK11)- identity=42; qcov=0.988; evalue=0; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005509 (calcium ion binding); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07645 (EGF_CA); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017987 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802733.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802733.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802733.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802733.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802733.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:18756157 |
CAT |
C |
2bp_deletion | frameshift_variant | 1 | B41 |
Chr3:18756157 |
CAT |
C |
2bp_deletion | CDS_variant | 1 | B41 |
Chr3:18756177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:18756282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C10 |
Chr3:18756424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr3:18756437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C58 |
Chr3:18756476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B85,C10 |
Chr3:18756486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:18756509 |
A |
AAT |
2bp_insertion | frameshift_variant | 6 | B4,B71,B77,B99,C26,C48 |
Chr3:18756538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,B86 |
Chr3:18756563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:18756633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802733.1PF13947
GUB_WAK_bind 40-97 aa
PF07645
EGF_CA 298-335 aa
PF00069
Pkinase 424-690 aa
PF07714
PK_Tyr_Ser-Thr 429-694 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802733.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 40 | 97 | 2.7e-08 | 34.8 | Wall-associated receptor kinase galacturonan-binding |
XP_057802733.1 |
Pfam | PF07645 |
EGF_CA | Domain | 298 | 335 | 3.9e-08 | 34.1 | Calcium-binding EGF domain |
XP_057802733.1 |
Pfam | PF00069 |
Pkinase | Domain | 424 | 690 | 2.2e-45 | 155.8 | Protein kinase domain |
XP_057802733.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 429 | 694 | 9.2e-46 | 156.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。