当前解析结果
SmilChr03G001555| 统一新 Gene ID | SmilChr03G001555 |
|---|---|
| 名称 | SmilChr03G001555 |
| 描述 | uncharacterized SmilChr03G001555 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 19620025 - 19622912 / + |
| NCBI Gene ID | LOC131018016 |
|---|---|
| GeneID | 131018016 |
| locus_tag | - |
| NCBI Name | LOC131018016 |
| 原始查询 | LOC131018016 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828462]; symbol=AT4G23620; hit=AT4G23620; species=arabidopsis; confidence=high |
| 产物 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828462]; symbol=AT4G23620; hit=AT4G23620; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G23620 (AT4G23620)Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828462] identity=68.1; qcov=0.893; evalue=5.02e-124; confidence=high |
| Rice | Os01g0593500- identity=64.4; qcov=0.773; evalue=3.02e-104; confidence=high |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation); GO:0008097 (5S rRNA binding); GO:0022625 (cytosolic large ribosomal subunit) |
| KEGG | smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01386 (Ribosomal_L25p); PF14693 (Ribosomal_TL5_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018016 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057802743.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057802743.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802743.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802743.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:19620073 |
G |
GAT |
2bp_insertion | stop_gained,frameshift_variant | 6 | B28,B45,C32,C50,C6,C68 |
Chr3:19620110 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | C40,C43 |
Chr3:19620110 |
A |
AT |
1bp_insertion | CDS_variant | 2 | C40,C43 |
Chr3:19620145 |
T |
TTA |
2bp_insertion | stop_gained,frameshift_variant | 9 | A18,B26,B28,B44,B45,B95,C32,C50,C68 |
Chr3:19620151 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C58 |
Chr3:19620245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:19620340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A24,B50,D3 |
Chr3:19620558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B105,B69 |
Chr3:19622503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:19622534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802743.1PF01386
Ribosomal_L25p 87-190 aa
PF14693
Ribosomal_TL5_C 200-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802743.1 |
Pfam | PF01386 |
Ribosomal_L25p | Domain | 87 | 190 | 5.6e-10 | 40.2 | Ribosomal L25p family |
XP_057802743.1 |
Pfam | PF14693 |
Ribosomal_TL5_C | Domain | 200 | 282 | 2.7e-19 | 70.0 | Ribosomal protein TL5, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。