Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G001556`

染色体: Chr03 坐标: 19624259-19628291 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G001556`
名称	SmilChr03G001556
描述	glycosyl hydrolase 5 family protein-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	19624259 - 19628291 / `+`

ID 对照

NCBI Gene ID	`LOC131018017`
GeneID	`131018017`
locus_tag	`-`
NCBI Name	`LOC131018017`
原始查询	`LOC131018017`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycosyl hydrolase 5 family protein-like
产物	glycosyl hydrolase 5 family protein-like
Arabidopsis	`AT1G13130` (AT1G13130) Cellulase (glycosyl hydrolase family 5) protein [Source:NCBI gene (formerly Entrezgene);Acc:837870] identity=42.2; qcov=0.97; evalue=1.52e-139; confidence=medium
Rice	`Os04g0481200` - identity=45.6; qcov=0.972; evalue=1.22e-155; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0071704 (GO:0071704)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00150 (Cellulase)
InterPro	-
eggNOG	-
NR	GeneID:131018017

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057802744.1`
2	Nucleus	细胞核	0.00000	`XP_057802744.1`
3	Chromosome	染色体	0.00000	`XP_057802744.1`
4	Centromere	着丝粒	0.00000	`XP_057802744.1`
5	Chromatin	染色质	0.00000	`XP_057802744.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:19624391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B14,B50,B65
`Chr3:19624396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:19624478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,C64,C66
`Chr3:19624592`	`A`	`AT`	1bp_insertion	frameshift_variant	6	A20,B71,B73,C58,C59,D3
`Chr3:19624615`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B2
`Chr3:19624615`	`GC`	`G`	1bp_deletion	CDS_variant	1	B2
`Chr3:19624819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:19624825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr3:19624836`	`CGA`	`C`	2bp_deletion	frameshift_variant	1	B9
`Chr3:19624836`	`CGA`	`C`	2bp_deletion	CDS_variant	1	B9
`Chr3:19624840`	`T`	`TCG`	2bp_insertion	frameshift_variant	1	B9
`Chr3:19624840`	`T`	`TCG`	2bp_insertion	CDS_variant	1	B9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802744.1

533 aa

266

533

Cellulase

PF00150 Cellulase 67-349 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802744.1`	Pfam	`PF00150`	Cellulase	Domain	67	349	8.3e-24	85.2	Cellulase (glycosyl hydrolase family 5)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946761.1
TTTACCACAAAACAAATTTAAGCAAATGTAATACATCCATATCAACAAACATTAACAAATGTCTATAAATAAGAATGAGATTACTTGAAAAAGGAAAAGTTATAAAAAATGGCAAGAGGAATTCGGAATGACGAAGCGATGTTGGCGTTTCTGCTTCTGCAAATCGTTACCTTTTGCAGCTCATGGCCGCTGTCGACGAACTCGCGATGGATAGTGGACGACGCGAGCGGGAAGCGCGTGAAGCTAGCGTGTGTGAATTG...

CDS

1 records

下载 CDS FASTA

LOC131018017
ATGGCAAGAGGAATTCGGAATGACGAAGCGATGTTGGCGTTTCTGCTTCTGCAAATCGTTACCTTTTGCAGCTCATGGCCGCTGTCGACGAACTCGCGATGGATAGTGGACGACGCGAGCGGGAAGCGCGTGAAGCTAGCGTGTGTGAATTGGCCTTCGCACTTGGAGCCAATGATCGCAGAGGGCCTGGAAAAGAAGCCAATCAACGTTATAGTGAAGAAGATAAGTGAAACGGGGTTCAACTGCGTGCGGTTCACGTG...

Protein

1 records

下载 Protein FASTA

XP_057802744.1
MARGIRNDEAMLAFLLLQIVTFCSSWPLSTNSRWIVDDASGKRVKLACVNWPSHLEPMIAEGLEKKPINVIVKKISETGFNCVRFTWSTYMFTRPDYGNLTVSKSLERFNLSAAKAGIAKNNPRFLNMSVVQLHKAVVDELGKNKVMVVLDNHVSRPTWCCSGDGNGFFGDADFSPEEWLRGLAAVAKAYKAHPAVVGMSMRNELRGSRQNEADWYKYMQQGANTIHAQSPDFLVIVSGLNFDNNLGFLKSKPLAVNVRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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