当前解析结果
SmilChr03G001562| 统一新 Gene ID | SmilChr03G001562 |
|---|---|
| 名称 | SmilChr03G001562 |
| 描述 | glycosyl hydrolase 5 family protein-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 19721372 - 19725638 / + |
| NCBI Gene ID | LOC131018024 |
|---|---|
| GeneID | 131018024 |
| locus_tag | - |
| NCBI Name | LOC131018024 |
| 原始查询 | LOC131018024 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyl hydrolase 5 family protein-like |
| 产物 | glycosyl hydrolase 5 family protein-like |
| Arabidopsis | AT1G13130 (AT1G13130)Cellulase (glycosyl hydrolase family 5) protein [Source:NCBI gene (formerly Entrezgene);Acc:837870] identity=42.9; qcov=0.972; evalue=1.58e-150; confidence=medium |
| Rice | Os02g0596200- identity=44; qcov=1.05; evalue=9.69e-156; confidence=medium |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0071704 (GO:0071704) |
| KEGG | smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00150 (Cellulase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018024 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057802748.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802748.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802748.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802748.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802748.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:19721376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B62,C81,C87 |
Chr3:19721435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr3:19721632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B14,D1 |
Chr3:19721694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B117,D5 |
Chr3:19721791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B38,B39,C39,D6,D7 |
Chr3:19721848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B104,B24,C32,C68 |
Chr3:19721890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B28,B41,B44,B48,C50 |
Chr3:19723738 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B2,C45,C82 |
Chr3:19723738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,C45,C82 |
Chr3:19723873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B67,C46 |
Chr3:19724025 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr3:19725253 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B67,C46,C58,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802748.1PF00150
Cellulase 60-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802748.1 |
Pfam | PF00150 |
Cellulase | Domain | 60 | 346 | 1e-22 | 81.6 | Cellulase (glycosyl hydrolase family 5) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。