Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G001562

染色体: Chr03 坐标: 19721372-19725638 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G001562
名称SmilChr03G001562
描述glycosyl hydrolase 5 family protein-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向19721372 - 19725638 / +

ID 对照

NCBI Gene IDLOC131018024
GeneID131018024
locus_tag-
NCBI NameLOC131018024
原始查询LOC131018024

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述glycosyl hydrolase 5 family protein-like
产物glycosyl hydrolase 5 family protein-like
ArabidopsisAT1G13130 (AT1G13130)
Cellulase (glycosyl hydrolase family 5) protein [Source:NCBI gene (formerly Entrezgene);Acc:837870]
identity=42.9; qcov=0.972; evalue=1.58e-150; confidence=medium
RiceOs02g0596200
-
identity=44; qcov=1.05; evalue=9.69e-156; confidence=medium
GOGO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0071704 (GO:0071704)
KEGGsmil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00150 (Cellulase)
InterPro-
eggNOG-
NRGeneID:131018024

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057802748.1
2 Nucleus 细胞核 0.00000 XP_057802748.1
3 Chromosome 染色体 0.00000 XP_057802748.1
4 Centromere 着丝粒 0.00000 XP_057802748.1
5 Chromatin 染色质 0.00000 XP_057802748.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:19721376 C T EMS_canonical_SNV CDS_variant 3 B62,C81,C87
Chr3:19721435 C T EMS_canonical_SNV CDS_variant 1 C23
Chr3:19721632 C T EMS_canonical_SNV CDS_variant 3 B120,B14,D1
Chr3:19721694 C T EMS_canonical_SNV CDS_variant 3 A10,B117,D5
Chr3:19721791 G A EMS_canonical_SNV CDS_variant 5 B38,B39,C39,D6,D7
Chr3:19721848 C T EMS_canonical_SNV CDS_variant 5 A18,B104,B24,C32,C68
Chr3:19721890 C T EMS_canonical_SNV CDS_variant 5 B28,B41,B44,B48,C50
Chr3:19723738 C T EMS_canonical_SNV stop_gained 3 B2,C45,C82
Chr3:19723738 C T EMS_canonical_SNV CDS_variant 3 B2,C45,C82
Chr3:19723873 G A EMS_canonical_SNV CDS_variant 2 B67,C46
Chr3:19724025 C T EMS_canonical_SNV CDS_variant 1 B105
Chr3:19725253 C T EMS_canonical_SNV CDS_variant 4 B67,C46,C58,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802748.1
533 aa
N
1
266
533
Cellulase
C
PF00150 Cellulase 60-346 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802748.1 Pfam PF00150 Cellulase Domain 60 346 1e-22 81.6 Cellulase (glycosyl hydrolase family 5)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057946765.1
ATGGCGACGAATTATTTGGTGGTGTTTCTGCTTCTGCAAATCGTCGCCTTCTGCAGTTCATCGCCGCTGTCGACGAACTCGCGATGGATAGTGGACGACGCGAGCGGGAAGCGCGTGAAGCTAGCGTGTGTGAATTGGGCTTCACACTTGGAGCCAATGATCGCAGAGGGCCTCGAAAAGAAGCCAATCAACGAGATAATAAAGAAGATAAGTGAAACGGGGTTTAACTGCGTGAGGTTCACGTGGGCGACGTATATGTT...

CDS

1 records

下载 CDS FASTA
LOC131018024
ATGGCGACGAATTATTTGGTGGTGTTTCTGCTTCTGCAAATCGTCGCCTTCTGCAGTTCATCGCCGCTGTCGACGAACTCGCGATGGATAGTGGACGACGCGAGCGGGAAGCGCGTGAAGCTAGCGTGTGTGAATTGGGCTTCACACTTGGAGCCAATGATCGCAGAGGGCCTCGAAAAGAAGCCAATCAACGAGATAATAAAGAAGATAAGTGAAACGGGGTTTAACTGCGTGAGGTTCACGTGGGCGACGTATATGTT...

Protein

1 records

下载 Protein FASTA
XP_057802748.1
MATNYLVVFLLLQIVAFCSSSPLSTNSRWIVDDASGKRVKLACVNWASHLEPMIAEGLEKKPINEIIKKISETGFNCVRFTWATYMFTRPDYGNLKVSESLDKYNLSAAKAGIAKNNPQFLEMTVVELHKAVVSELGKNKVMVVLDNHVSRPTWCCAGNDGNGFFGDAYFDPSEWLQGLAAVATTYKGFPEVVGMSMRNELRGGRQNVPDWYKYMQEGANTIHAQSPDFLVIVSGLYTDTNLGYLRSKPFAVNFTNKLVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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