当前解析结果
SmilChr03G001571| 统一新 Gene ID | SmilChr03G001571 |
|---|---|
| 名称 | SmilChr03G001571 |
| 描述 | uncharacterized SmilChr03G001571 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 19841966 - 19849617 / + |
| NCBI Gene ID | LOC131018028 |
|---|---|
| GeneID | 131018028 |
| locus_tag | - |
| NCBI Name | LOC131018028 |
| 原始查询 | LOC131018028 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA polymerase III subunit RPC82 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824061]; symbol=AT3G49000; hit=AT3G49000; species=arabidopsis; confidence=medium |
| 产物 | RNA polymerase III subunit RPC82 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824061]; symbol=AT3G49000; hit=AT3G49000; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G49000 (AT3G49000)RNA polymerase III subunit RPC82 family protein [Source:NCBI gene (formerly Entrezgene);Acc:824061] identity=40.1; qcov=0.938; evalue=1.93e-97; confidence=medium |
| Rice | Os01g0679000 (B1144G04.33-1)- identity=37.7; qcov=0.938; evalue=2.37e-75; confidence=medium |
| GO | GO:0003697 (single-stranded DNA binding); GO:0005666 (RNA polymerase III complex); GO:0006351 (DNA-templated transcription) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05645 (RNA_pol_Rpc82); PF08221 (HTH_9); PF22536 (WHD_POLR3C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018028 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057802752.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057802752.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057802754.1 |
| 4 | Chromosome | 染色体 | 0.40000 | XP_057802752.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802752.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:19843188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,C46,C58,C85 |
Chr3:19844843 |
C |
T |
EMS_canonical_SNV | stop_gained | 88 | A10,A13,A14,A15,A16,A18,A2,A20,A23,A6,A7,A8,B1,B102,B104,B11,B115,B118,B125,B131,B134,B14,B24,B27,B28,B3,B33,B34,B48,B50,B52,B53,B54,B55,B61,B64,B66,B67,B69,B74,B78,B79,B8,B80,B83,B86,B89,B9,B92,B93,B99,C1,C12,C15,C18,C2,C21,C23,C27,C28,C29,C3,C30,C32,C33,C35,C37,C49,C5,C51,C53,C54,C55,C56,C63,C65,C68,C69,C7,C73,C79,C8,C80,C84,C87,D2,D4,D5 |
Chr3:19844857 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B79,C37 |
Chr3:19844857 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B79,C37 |
Chr3:19844938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B80 |
Chr3:19844949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C27,C53 |
Chr3:19845094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B67,C46,C58,C85 |
Chr3:19845314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B32,B5,B57 |
Chr3:19846608 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr3:19847768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:19847826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B22,B23,D1 |
Chr3:19848150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B105,B7,C82,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802752.1PF08221
HTH_9 9-68 aa
PF05645
RNA_pol_Rpc82 148-330 aa
PF22536
WHD_POLR3C 367-439 aa
XP_057802753.1PF08221
HTH_9 9-68 aa
PF05645
RNA_pol_Rpc82 148-330 aa
PF22536
WHD_POLR3C 367-439 aa
XP_057802754.1PF08221
HTH_9 9-68 aa
PF05645
RNA_pol_Rpc82 148-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802752.1 |
Pfam | PF08221 |
HTH_9 | Domain | 9 | 68 | 7.1e-20 | 71.6 | RNA polymerase III subunit RPC82 helix-turn-helix domain |
XP_057802752.1 |
Pfam | PF05645 |
RNA_pol_Rpc82 | Family | 148 | 330 | 1.7e-17 | 64.7 | RNA polymerase III subunit RPC82 |
XP_057802752.1 |
Pfam | PF22536 |
WHD_POLR3C | Domain | 367 | 439 | 6.9e-15 | 55.5 | POLR3C, C-terminal winged-helix domain |
XP_057802753.1 |
Pfam | PF08221 |
HTH_9 | Domain | 9 | 68 | 7.1e-20 | 71.6 | RNA polymerase III subunit RPC82 helix-turn-helix domain |
XP_057802753.1 |
Pfam | PF05645 |
RNA_pol_Rpc82 | Family | 148 | 330 | 1.7e-17 | 64.7 | RNA polymerase III subunit RPC82 |
XP_057802753.1 |
Pfam | PF22536 |
WHD_POLR3C | Domain | 367 | 439 | 6.9e-15 | 55.5 | POLR3C, C-terminal winged-helix domain |
XP_057802754.1 |
Pfam | PF08221 |
HTH_9 | Domain | 9 | 68 | 1.5e-19 | 70.5 | RNA polymerase III subunit RPC82 helix-turn-helix domain |
XP_057802754.1 |
Pfam | PF05645 |
RNA_pol_Rpc82 | Family | 148 | 331 | 1e-17 | 65.4 | RNA polymerase III subunit RPC82 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。