Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G001435

染色体: Chr01 坐标: 28023427-28025523 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G001435
名称SmilChr01G001435
描述uncharacterized SmilChr01G001435
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向28023427 - 28025523 / -

ID 对照

NCBI Gene IDLOC131018099
GeneID131018099
locus_tag-
NCBI NameLOC131018099
原始查询LOC131018099

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high
产物Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]; symbol=AT2G04305; hit=AT2G04305; species=arabidopsis; confidence=high
ArabidopsisAT2G04305 (AT2G04305)
Magnesium transporter CorA-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:814969]
identity=71.5; qcov=0.967; evalue=0; confidence=high
RiceOs08g0130000 (OsSTA203)
-
identity=52.7; qcov=1.03; evalue=1.63e-145; confidence=high
GOGO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0046873 (metal ion transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG-
PfamPF01544 (CorA)
InterPro-
eggNOG-
NRGeneID:131018099

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.40000 XP_057802806.1
2 Golgi apparatus 高尔基体 0.40000 XP_057802806.1
3 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057802806.1
4 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057802806.1
5 Trans-golgi network Trans-golgi network 0.20000 XP_057802806.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:28023712 C T EMS_canonical_SNV CDS_variant 1 C9
Chr1:28023904 C T EMS_canonical_SNV CDS_variant 2 C10,C79
Chr1:28024128 G A EMS_canonical_SNV CDS_variant 2 C11,C69
Chr1:28024165 C T EMS_canonical_SNV CDS_variant 1 C44
Chr1:28024399 G A EMS_canonical_SNV CDS_variant 3 C3,C71,D8
Chr1:28024505 TCG T 2bp_deletion frameshift_variant 1 C26
Chr1:28024505 TCG T 2bp_deletion CDS_variant 1 C26
Chr1:28024621 G A EMS_canonical_SNV CDS_variant 2 A16,B29
Chr1:28024690 C T EMS_canonical_SNV CDS_variant 3 B127,B20,C1
Chr1:28024699 C T EMS_canonical_SNV CDS_variant 4 B125,B90,C83,D6
Chr1:28024894 G A EMS_canonical_SNV CDS_variant 2 B111,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802806.1
453 aa
N
1
226
453
CorA
C
PF01544 CorA 75-413 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802806.1 Pfam PF01544 CorA Family 75 413 7.8e-30 104.9 CorA-like Mg2+ transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057946823.1
GCGATAAAGATTTGAAACCAAATATATAGTAGATAATGGTTATCCATCATGCAGGTAATTAATACTGTAGAAAGTGATGGTGCATGTTGCATTACTTATATCTCTTCCTATTTTAATTACCTAATTTCTCTAAATTAAACCCTCCTCTCATTTTACTCCGAACTTTTATCATTTTCTCTTTTCTTTTTGACATTCATAATCTAGGGATTTTTCTTTCTTTGAGGTTTGTTGATTAATTTAACGAGAGTAAAACATTTCAA...

CDS

1 records

下载 CDS FASTA
LOC131018099
ATGGAGATGAATGAGATAGAGAGGAACGAAGCAGGTGCAAGCGAGGCAGAGGTAGAGGTAGAGGACGTAGACAGTGAATCCTCACAGTCACAGGCAAGAAGCTACAAAGATAACTACATATACTCGTCCCAATACCCCGGCGCAGTGCGGCGAAAGGCGTACATATTCGACGGCGACGGCAGCTACTACAACCAAGAATGGAGCCTCAAGGAGGGCAAAGGCAAAGAATTCTGTTGGTATCACGTGGAGCTCCCAAAGGG...

Protein

1 records

下载 Protein FASTA
XP_057802806.1
MEMNEIERNEAGASEAEVEVEDVDSESSQSQARSYKDNYIYSSQYPGAVRRKAYIFDGDGSYYNQEWSLKEGKGKEFCWYHVELPKGKQKLSQLAQYLIDVLCPPLKLQDILSIASNGPFCGHVDGALVFRVNSPGPPSSNFSFRIAARVTEHSVITVSLGRVPRLGFSPANESLLSEIPAVETSDNISSKGGMVIREHVLDFLLTMNHSEEADNPVPRSVSNLVVHIIDTHVDHLQDTVTKLEMELDSLELELDRGGFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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