当前解析结果
SmilChr03G000296| 统一新 Gene ID | SmilChr03G000296 |
|---|---|
| 名称 | SmilChr03G000296 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3394264 - 3396483 / - |
| NCBI Gene ID | LOC131018101 |
|---|---|
| GeneID | 131018101 |
| locus_tag | - |
| NCBI Name | LOC131018101 |
| 原始查询 | LOC131018101 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=27.1; qcov=0.984; evalue=1.68e-55; confidence=low |
| Rice | Os07g0186500- identity=28.5; qcov=0.968; evalue=7.75e-75; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018101 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057802807.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057802807.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057802807.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057802807.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057802807.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3394269 |
TAG |
T |
2bp_deletion | frameshift_variant | 82 | A1,A16,A2,A23,A7,B101,B103,B107,B11,B111,B113,B117,B121,B122,B125,B127,B129,B13,B130,B131,B135,B138,B14,B15,B18,B20,B21,B26,B27,B31,B32,B34,B37,B38,B39,B46,B49,B5,B53,B6,B60,B64,B71,B72,B75,B76,B84,B89,B91,B93,B94,B98,C1,C13,C16,C17,C18,C19,C24,C27,C30,C33,C44,C49,C5,C53,C54,C55,C56,C62,C66,C67,C71,C75,C76,C8,C83,C84,D11,D3,D6,D9 |
Chr3:3394276 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B134,D10,D11 |
Chr3:3394276 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B134,D10,D11 |
Chr3:3394277 |
TCA |
T |
2bp_deletion | frameshift_variant | 29 | A10,A20,A24,A5,A6,B104,B107,B120,B122,B13,B133,B24,B30,B31,B48,B61,B72,B75,B97,C19,C21,C34,C35,C40,C42,C47,C8,C84,D10 |
Chr3:3394290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B27,C15,C38,C65 |
Chr3:3394291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B69,D10,D11 |
Chr3:3394300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B67,B72,C55 |
Chr3:3394314 |
G |
A |
EMS_canonical_SNV | stop_gained | 63 | A1,A16,A2,A7,B103,B111,B113,B117,B119,B121,B128,B13,B131,B138,B14,B15,B2,B20,B22,B26,B27,B28,B32,B34,B38,B39,B5,B6,B63,B64,B71,B74,B93,B94,B98,C1,C10,C13,C17,C18,C19,C24,C27,C29,C30,C31,C33,C44,C49,C5,C53,C54,C56,C62,C67,C71,C73,C75,C76,C84,D11,D3,D6 |
Chr3:3394317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B94,D2 |
Chr3:3394319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B34,B93,C53,C71,D6 |
Chr3:3394320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B16,C37 |
Chr3:3394328 |
TTA |
T |
2bp_deletion | frameshift_variant | 1 | A1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802807.1PF00931
NB-ARC 7-174 aa
PF23559
WHD_DRP 261-332 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802807.1 |
Pfam | PF00931 |
NB-ARC | Domain | 7 | 174 | 7.3e-40 | 137.1 | NB-ARC domain |
XP_057802807.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 261 | 332 | 4.5e-16 | 59.4 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。