当前解析结果
SmilChr03G000336| 统一新 Gene ID | SmilChr03G000336 |
|---|---|
| 名称 | SmilChr03G000336 |
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 3815839 - 3818373 / + |
| NCBI Gene ID | LOC131018116 |
|---|---|
| GeneID | 131018116 |
| locus_tag | - |
| NCBI Name | LOC131018116 |
| 原始查询 | LOC131018116 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-14 |
| 产物 | putative late blight resistance protein homolog R1B-14 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=26.7; qcov=0.995; evalue=3.23e-74; confidence=low |
| Rice | Os07g0186500- identity=30.3; qcov=0.982; evalue=1.74e-83; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018116 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057802822.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057802822.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802822.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802822.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802822.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:3815968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:3815989 |
CGA |
C |
2bp_deletion | frameshift_variant | 17 | A10,A16,B115,B122,B132,B137,B18,B4,B74,B89,B9,B90,B92,C28,C39,C46,C47 |
Chr3:3816018 |
CAG |
C |
2bp_deletion | frameshift_variant | 12 | B1,B108,B135,B36,B67,B68,B7,B79,C46,C51,C65,D9 |
Chr3:3816022 |
G |
GGA |
2bp_insertion | frameshift_variant | 13 | A13,B1,B108,B135,B36,B67,B68,B7,B79,C46,C51,C65,D9 |
Chr3:3816114 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B30,B8 |
Chr3:3816114 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B30,B8 |
Chr3:3816115 |
C |
CAG |
2bp_insertion | frameshift_variant | 2 | B30,B8 |
Chr3:3816115 |
C |
CAG |
2bp_insertion | CDS_variant | 2 | B30,B8 |
Chr3:3816343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,D9 |
Chr3:3816360 |
A |
ACC |
2bp_insertion | frameshift_variant | 2 | C53,D9 |
Chr3:3816360 |
A |
ACC |
2bp_insertion | CDS_variant | 2 | C53,D9 |
Chr3:3816362 |
C |
CTT |
2bp_insertion | frameshift_variant | 2 | C53,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802822.1PF00931
NB-ARC 162-331 aa
PF23559
WHD_DRP 417-480 aa
PF23598
LRR_14 511-783 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802822.1 |
Pfam | PF00931 |
NB-ARC | Domain | 162 | 331 | 2.7e-43 | 148.2 | NB-ARC domain |
XP_057802822.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 417 | 480 | 5e-16 | 59.2 | Disease resistance protein Winged helix domain |
XP_057802822.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 511 | 783 | 7.3e-18 | 65.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。