Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000398`

染色体: Chr03 坐标: 4340710-4341887 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000398`
名称	SmilChr03G000398
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	4340710 - 4341887 / `-`

ID 对照

NCBI Gene ID	`LOC131018149`
GeneID	`131018149`
locus_tag	`-`
NCBI Name	`LOC131018149`
原始查询	`LOC131018149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=30.4; qcov=1.01; evalue=5.31e-26; confidence=low
Rice	`Os08g0382800` (OsFbox443) - identity=35.2; qcov=0.504; evalue=2.05e-16; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802850.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802850.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802850.1`
4	Chromosome	染色体	0.00000	`XP_057802850.1`
5	Centromere	着丝粒	0.00000	`XP_057802850.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:4340861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:4340966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:4341005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:4341170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr3:4341184`	`T`	`TAC`	2bp_insertion	frameshift_variant	1	B56
`Chr3:4341184`	`T`	`TAC`	2bp_insertion	CDS_variant	1	B56
`Chr3:4341190`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B22
`Chr3:4341190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:4341192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B23,B48,B56,B83
`Chr3:4341208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:4341222`	`TCC`	`T`	2bp_deletion	frameshift_variant	42	A21,A6,B102,B104,B106,B107,B112,B121,B129,B133,B140,B19,B28,B29,B30,B31,B34,B36,B61,B72,B83,B86,B87,B90,B92,B93,B95,C11,C12,C23,C29,C32,C36,C51,C55,C58,C65,C68,C69,C75,C80,D8
`Chr3:4341244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B52,C10,C74,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802850.1

361 aa

180

361

F-box

F-box-like

FBA_3

Beta-prop_KIB1-4

FBA_1

PF00646 F-box 34-72 aa PF12937 F-box-like 35-67 aa PF08268 FBA_3 108-299 aa PF03478 Beta-prop_KIB1-4 119-304 aa PF07734 FBA_1 127-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802850.1`	Pfam	`PF00646`	F-box	Domain	34	72	4.7e-11	42.8	F-box domain
`XP_057802850.1`	Pfam	`PF12937`	F-box-like	Domain	35	67	4.5e-07	30.2	F-box-like
`XP_057802850.1`	Pfam	`PF08268`	FBA_3	Repeat	108	299	8.5e-15	55.3	F-box associated beta propeller domain
`XP_057802850.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	119	304	5.4e-10	39.9	KIB1-4 beta-propeller
`XP_057802850.1`	Pfam	`PF07734`	FBA_1	Repeat	127	351	2.6e-21	76.7	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946867.1
ATGAAGAATGCGGAAAATAGAATAGGCAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGACGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTGTCAATATTGCCGGTGAAATCACTCTTGAGATTTAGGTGCGTTTCGAAAACATGGTGGTCTTTAATAGGAAGCAAACGCTTCATCAAAGCCCATCATCAAAATTCAATAAAAAATCCATCTTCCCC...

CDS

1 records

下载 CDS FASTA

LOC131018149
ATGAAGAATGCGGAAAATAGAATAGGCAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGACGAAGAAGAAGAAATCAGCAATCTCTCCATCTTCCAGAAGAAATCATCGAAGAAATACTGTCAATATTGCCGGTGAAATCACTCTTGAGATTTAGGTGCGTTTCGAAAACATGGTGGTCTTTAATAGGAAGCAAACGCTTCATCAAAGCCCATCATCAAAATTCAATAAAAAATCCATCTTCCCC...

Protein

1 records

下载 Protein FASTA

XP_057802850.1
MKNAENRIGRRRRRKRRRRRRRRRGRRRRNQQSLHLPEEIIEEILSILPVKSLLRFRCVSKTWWSLIGSKRFIKAHHQNSIKNPSSPHQRLITLGECSLQSLLSEAPISRYSLEITTLLAPLQIWGCCNGLFCVLSERPERVYLWNPSTRTSKKLPEISSPGHVRNYGFGWVESSDEYKVFVLLVDYDYYRGIDNWVGKVYSSKTKSWKTIELSGYLRVSWGRGVFAGGKLYWKNHQDKEIIFLDLKNEVFGRIELPCDQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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