Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001447`

染色体: Chr01 坐标: 28172135-28176748 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001447`
名称	SmilChr01G001447
描述	GATA transcription factor 19-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	28172135 - 28176748 / `-`

ID 对照

NCBI Gene ID	`LOC131018163`
GeneID	`131018163`
locus_tag	`-`
NCBI Name	`LOC131018163`
原始查询	`LOC131018163`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GATA transcription factor 19-like
产物	GATA transcription factor 19-like
Arabidopsis	`AT3G21175` (ZML1) ZIM-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:821670] identity=43.4; qcov=0.835; evalue=4.45e-50; confidence=medium
Rice	`Os03g0734900` (OsTIFY1b) - identity=47.4; qcov=0.641; evalue=2.73e-47; confidence=medium
GO	GO:0005515 (protein binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF00320 (GATA); PF06200 (tify); PF06203 (CCT); PF09425 (Jas_motif)
InterPro	-
eggNOG	-
NR	GeneID:131018163

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802866.1`
2	Chromosome	染色体	0.00000	`XP_057802866.1`
3	Centromere	着丝粒	0.00000	`XP_057802866.1`
4	Chromatin	染色质	0.00000	`XP_057802866.1`
5	Telomere	端粒	0.00000	`XP_057802866.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:28172357`	`C`	`CGG`	2bp_insertion	frameshift_variant	164	A1,A10,A15,A16,A18,A19,A2,A22,A23,A24,A25,A8,A9,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B111,B112,B113,B117,B118,B119,B120,B121,B125,B126,B129,B13,B130,B131,B132,B133,B134,B135,B136,B14,B15,B16,B18,B2,B20,B23,B24,B29,B3,B30,B31,B32,B33,B34,B35,B40,B41,B42,B43,B44,B45,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B58,B60,B61,B62,B63,B64,B65,B66,B68,B70,B73,B74,B77,B78,B79,B8,B80,B81,B82,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B95,B96,C11,C12,C13,C15,C18,C19,C2,C20,C23,C24,C25,C27,C3,C30,C32,C33,C34,C35,C38,C39,C4,C40,C43,C44,C46,C48,C5,C51,C52,C55,C56,C58,C60,C61,C63,C64,C65,C66,C68,C69,C70,C71,C72,C73,C74,C76,C80,C82,C83,C84,C85,D11,D2,D4,D5,D6,D7,D8
`Chr1:28172922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B138,B140,C60
`Chr1:28172965`	`CA`	`C`	1bp_deletion	frameshift_variant	1	D11
`Chr1:28172965`	`CA`	`C`	1bp_deletion	CDS_variant	1	D11
`Chr1:28172967`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	D11
`Chr1:28172967`	`GTC`	`G`	2bp_deletion	CDS_variant	1	D11
`Chr1:28174298`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B54,C26,C33,C46,C87
`Chr1:28176336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B99,C19,C39,C75
`Chr1:28176342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B115,B127,B20,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802866.1

332 aa

166

332

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-175 aa PF00320 GATA 202-237 aa

XP_057802873.1

327 aa

164

327

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-175 aa PF00320 GATA 202-237 aa

XP_057802877.1

326 aa

163

326

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-175 aa PF00320 GATA 202-237 aa

XP_057802884.1

307 aa

154

307

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-175 aa PF00320 GATA 202-237 aa

XP_057802888.1

306 aa

153

306

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-175 aa PF00320 GATA 202-237 aa

XP_057802893.1

294 aa

147

294

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-169 aa PF00320 GATA 169-204 aa

XP_057802897.1

293 aa

146

293

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-169 aa PF00320 GATA 169-204 aa

XP_057802905.1

273 aa

136

273

tify

Jas_motif

CCT

GATA

PF06200 tify 68-97 aa PF09425 Jas_motif 134-156 aa PF06203 CCT 134-169 aa PF00320 GATA 169-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802866.1`	Pfam	`PF06200`	tify	Domain	68	97	3.2e-10	39.9	tify domain
`XP_057802866.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	2e-07	31.4	Jas motif
`XP_057802866.1`	Pfam	`PF06203`	CCT	Motif	134	175	4e-15	56.3	CCT motif
`XP_057802866.1`	Pfam	`PF00320`	GATA	Domain	202	237	1.4e-10	41.3	GATA zinc finger
`XP_057802873.1`	Pfam	`PF06200`	tify	Domain	68	97	3.1e-10	39.9	tify domain
`XP_057802873.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	2.1e-07	31.3	Jas motif
`XP_057802873.1`	Pfam	`PF06203`	CCT	Motif	134	175	4e-15	56.3	CCT motif
`XP_057802873.1`	Pfam	`PF00320`	GATA	Domain	202	237	1.1e-10	41.6	GATA zinc finger
`XP_057802877.1`	Pfam	`PF06200`	tify	Domain	68	97	3.1e-10	39.9	tify domain
`XP_057802877.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	2.1e-07	31.3	Jas motif
`XP_057802877.1`	Pfam	`PF06203`	CCT	Motif	134	175	4e-15	56.3	CCT motif
`XP_057802877.1`	Pfam	`PF00320`	GATA	Domain	202	237	1.2e-10	41.6	GATA zinc finger
`XP_057802884.1`	Pfam	`PF06200`	tify	Domain	68	97	2.9e-10	40.0	tify domain
`XP_057802884.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	2e-07	31.4	Jas motif
`XP_057802884.1`	Pfam	`PF06203`	CCT	Motif	134	175	3.7e-15	56.4	CCT motif
`XP_057802884.1`	Pfam	`PF00320`	GATA	Domain	202	237	1.2e-10	41.5	GATA zinc finger
`XP_057802888.1`	Pfam	`PF06200`	tify	Domain	68	97	2.9e-10	40.0	tify domain
`XP_057802888.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	1.9e-07	31.4	Jas motif
`XP_057802888.1`	Pfam	`PF06203`	CCT	Motif	134	175	3.7e-15	56.4	CCT motif
`XP_057802888.1`	Pfam	`PF00320`	GATA	Domain	202	237	1.2e-10	41.5	GATA zinc finger
`XP_057802893.1`	Pfam	`PF06200`	tify	Domain	68	97	2.7e-10	40.1	tify domain
`XP_057802893.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	1.8e-07	31.5	Jas motif
`XP_057802893.1`	Pfam	`PF06203`	CCT	Motif	134	169	1.5e-11	44.9	CCT motif
`XP_057802893.1`	Pfam	`PF00320`	GATA	Domain	169	204	1e-10	41.7	GATA zinc finger
`XP_057802897.1`	Pfam	`PF06200`	tify	Domain	68	97	2.7e-10	40.1	tify domain
`XP_057802897.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	1.8e-07	31.5	Jas motif
`XP_057802897.1`	Pfam	`PF06203`	CCT	Motif	134	169	1.5e-11	44.9	CCT motif
`XP_057802897.1`	Pfam	`PF00320`	GATA	Domain	169	204	1.1e-10	41.7	GATA zinc finger
`XP_057802905.1`	Pfam	`PF06200`	tify	Domain	68	97	2.5e-10	40.2	tify domain
`XP_057802905.1`	Pfam	`PF09425`	Jas_motif	Motif	134	156	1.6e-07	31.7	Jas motif
`XP_057802905.1`	Pfam	`PF06203`	CCT	Motif	134	169	1.3e-11	45.0	CCT motif
`XP_057802905.1`	Pfam	`PF00320`	GATA	Domain	169	204	1.1e-10	41.6	GATA zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057946894.1
ATAACAGCTAAAATTTTCACCGTTTGATATCCAGGTGCCACGTGAACCAAACACAGCAAAAGACGACCCCACGTGATCGAAACCCTCCCTAAACTGGACCCCACGCAGCGTAATCCTCACGCTACACGTGTACTAATTCGGATCGAGCAACGGCTCTGATTCTATCTCCCCCACAGACTCCCTTCGTTTCCAACCATTTTCAGTCCCCCTTTTTTGTCTATATCCACAGCCCAAAACATTAATCGCTAATTACCACCTAA...

XM_057946910.1
CCCCCACAGACTCCCTTCGTTTCCAACCATTTTCAGTCCCCCTTTTTTGTCTATATCCACAGCCCAAAACATTAATCGCTAATTACCACCTAAATCTTCACTATTTCACTCGCTTAATCTTTCTTTAAAAAATCACTAATTCTTGCGCCGTCTAGGGTTTTCAATTTCGCTTCTGTTTCCTTTCTTGCGTGCTGTGAACTGCACTCGCGCATGGATGCTGGGAAGGGGATGCCGTTTGAGAATGCGAGCATGCCTATAAG...

CDS

8 records

下载 CDS FASTA

LOC131018163
ATGGATGCTGGGAAGGGGATGCCGTTTGAGAATGCGAGCATGCCTATAAGAGTGCATGAAAATGGCGGAGGATTCGACGCTGATGACATAAGCGGCGGGGGCGATGACACGATGATCAGTGCGGAGGAGATGTCCACGCCCATAGCTGCGACTCCAGTAAATAGTCAATCCTCGCAGCAGCGGCTGTCGGCGTCCAGGTGTAGTGAGCTCACCATTTCTTTCGAAGGCGAAGTCTACGTGTTTCCTGCTGTTACTCCGGA...

Protein

8 records

下载 Protein FASTA

XP_057802866.1
MDAGKGMPFENASMPIRVHENGGGFDADDISGGGDDTMISAEEMSTPIAATPVNSQSSQQRLSASRCSELTISFEGEVYVFPAVTPEQVQEVLLLLGGREMPTGIPNTEFLLQISDKGVVGVDDDSSQPTVSRRIASLERFREKRKERCFDKKIRYTCRKEVAQRMLRKNGQFASVKDMCKISHDNWNPGNSTQPEPVLRRCQHCGICETSTPAMRRGPKGPRTLCNACGLMWANKGNLKDLGKGGRHTFEQTEPACDVL...

XP_057802873.1
MDAGKGMPFENASMPIRVHENGGGFDADDISGGGDDTMISAEEMSTPIAATPVNSQSSQQRLSASRCSELTISFEGEVYVFPAVTPEQVQEVLLLLGGREMPTGIPNTEFLLQISDKGVVGVDDDSSQPTVSRRIASLERFREKRKERCFDKKIRYTCRKEVAQRMLRKNGQFASVKDMCKISHDNWNPGNSTQPEPVLRRCQHCGICETSTPAMRRGPKGPRTLCNACGLMWANKGNLKDLGKGGRHTFEQTEPACDVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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