Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G000448

染色体: Chr03 坐标: 4796700-4797674 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G000448
名称SmilChr03G000448
描述cytosolic sulfotransferase 5-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向4796700 - 4797674 / +

ID 对照

NCBI Gene IDLOC131018170
GeneID131018170
locus_tag-
NCBI NameLOC131018170
原始查询LOC131018170

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytosolic sulfotransferase 5-like
产物cytosolic sulfotransferase 5-like
ArabidopsisAT3G45070 (AT3G45070)
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642]
identity=49.7; qcov=0.975; evalue=1.42e-113; confidence=high
RiceOs06g0626600
-
identity=47.4; qcov=1; evalue=1.2e-98; confidence=high
GOGO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation)
KEGG-
PfamPF00685 (Sulfotransfer_1); PF13469 (Sulfotransfer_3)
InterPro-
eggNOG-
NRGeneID:131018170

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057802871.1
2 Cytosol 细胞质基质 1.00000 XP_057802871.1
3 Nucleus 细胞核 0.00000 XP_057802871.1
4 Chromosome 染色体 0.00000 XP_057802871.1
5 Centromere 着丝粒 0.00000 XP_057802871.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:4796727 C T EMS_canonical_SNV CDS_variant 2 A15,D1
Chr3:4796954 C T EMS_canonical_SNV CDS_variant 2 B25,B37
Chr3:4796958 C T EMS_canonical_SNV CDS_variant 2 B37,B74
Chr3:4796968 G A EMS_canonical_SNV CDS_variant 2 B69,B74
Chr3:4796976 C T EMS_canonical_SNV CDS_variant 4 A24,B60,C52,C74
Chr3:4796995 A AC 1bp_insertion frameshift_variant 2 B104,C34
Chr3:4796995 A AC 1bp_insertion CDS_variant 2 B104,C34
Chr3:4797053 C T EMS_canonical_SNV CDS_variant 2 C41,C81
Chr3:4797056 C T EMS_canonical_SNV CDS_variant 4 B43,B65,C41,C44
Chr3:4797074 C T EMS_canonical_SNV CDS_variant 3 B23,B31,C39
Chr3:4797086 G A EMS_canonical_SNV CDS_variant 3 C41,C60,C81
Chr3:4797092 C T EMS_canonical_SNV CDS_variant 3 C41,C60,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057802871.1
324 aa
N
1
162
324
Sulfotransfer_1
Sulfotransfer_3
C
PF00685 Sulfotransfer_1 64-321 aa PF13469 Sulfotransfer_3 154-246 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057802871.1 Pfam PF00685 Sulfotransfer_1 Domain 64 321 5.2e-76 256.1 Sulfotransferase domain
XP_057802871.1 Pfam PF13469 Sulfotransfer_3 Domain 154 246 2.6e-09 38.4 Sulfotransferase family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057946888.1
ATGTCGTCTTCAAAATTTTTCCAATCGCCACAACTATCCCAAGACTTGAAAGAGTTCCTCTCCACTCTACCAAGAAAAGAAGTATTCTCCAATGGCCACCCTCTCTGCCGCTATCAGTATCAAGGTTTCTGGTACGTGGACGTCATTCTCGAAGCTGTTATCTCAATCCAAGAACATTTCCAAGCGGAGGATTCCGACGTTTTCGTCGCCTCCAATCCGAAATGTGGCACGACGTGGCTGAAGGCGATCGCCTTCGCCCT...

CDS

1 records

下载 CDS FASTA
LOC131018170
ATGTCGTCTTCAAAATTTTTCCAATCGCCACAACTATCCCAAGACTTGAAAGAGTTCCTCTCCACTCTACCAAGAAAAGAAGTATTCTCCAATGGCCACCCTCTCTGCCGCTATCAGTATCAAGGTTTCTGGTACGTGGACGTCATTCTCGAAGCTGTTATCTCAATCCAAGAACATTTCCAAGCGGAGGATTCCGACGTTTTCGTCGCCTCCAATCCGAAATGTGGCACGACGTGGCTGAAGGCGATCGCCTTCGCCCT...

Protein

1 records

下载 Protein FASTA
XP_057802871.1
MSSSKFFQSPQLSQDLKEFLSTLPRKEVFSNGHPLCRYQYQGFWYVDVILEAVISIQEHFQAEDSDVFVASNPKCGTTWLKAIAFALLNRRRHPATSGDHPFLSRNPHDLVPFLEIGFYGSRKARDIASFPSPRLLATHVPYSSLPESIRSKCKIVYVARDPKDTLVSARHFSARVGMLDTTMAEVLEQFCEGSNIYGPFWDHVVGYWKQSLENPERVLFLKYEDMKARPAAEVRRVAEFLGCAFSAEEEEAGEVDRIVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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