当前解析结果
SmilChr03G000453| 统一新 Gene ID | SmilChr03G000453 |
|---|---|
| 名称 | SmilChr03G000453 |
| 描述 | cytosolic sulfotransferase 5-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 4838988 - 4839974 / + |
| NCBI Gene ID | LOC131018171 |
|---|---|
| GeneID | 131018171 |
| locus_tag | - |
| NCBI Name | LOC131018171 |
| 原始查询 | LOC131018171 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytosolic sulfotransferase 5-like |
| 产物 | cytosolic sulfotransferase 5-like |
| Arabidopsis | AT3G45070 (AT3G45070)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823642] identity=48.9; qcov=0.985; evalue=1.33e-115; confidence=high |
| Rice | Os04g0526300- identity=48; qcov=0.979; evalue=7.73e-101; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0008146 (sulfotransferase activity); GO:0051923 (sulfation) |
| KEGG | - |
| Pfam | PF00685 (Sulfotransfer_1); PF13469 (Sulfotransfer_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018171 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057802872.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057802872.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802872.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802872.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802872.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:4839116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:4839119 |
G |
GGA |
2bp_insertion | frameshift_variant | 20 | A15,A6,B34,B40,B47,B56,B6,B80,B90,B92,B96,C10,C25,C45,C58,C62,C74,C75,C81,C85 |
Chr3:4839168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B35,C71 |
Chr3:4839200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr3:4839237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr3:4839251 |
GA |
G |
1bp_deletion | frameshift_variant | 26 | A23,A9,B114,B127,B128,B15,B25,B37,B5,B77,B82,B84,B98,C1,C16,C3,C39,C4,C41,C51,C54,C60,C81,C83,C84,C9 |
Chr3:4839300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:4839320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,C30,C8 |
Chr3:4839323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B22,B23,C39 |
Chr3:4839338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr3:4839351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B140 |
Chr3:4839357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802872.1PF00685
Sulfotransfer_1 62-324 aa
PF13469
Sulfotransfer_3 155-247 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802872.1 |
Pfam | PF00685 |
Sulfotransfer_1 | Domain | 62 | 324 | 1e-72 | 245.4 | Sulfotransferase domain |
XP_057802872.1 |
Pfam | PF13469 |
Sulfotransfer_3 | Domain | 155 | 247 | 9.8e-10 | 39.8 | Sulfotransferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。