当前解析结果
SmilChr03G000537| 统一新 Gene ID | SmilChr03G000537 |
|---|---|
| 名称 | SmilChr03G000537 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 5836092 - 5836901 / + |
| NCBI Gene ID | LOC131018200 |
|---|---|
| GeneID | 131018200 |
| locus_tag | - |
| NCBI Name | LOC131018200 |
| 原始查询 | LOC131018200 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=27.5; qcov=1.01; evalue=1.9e-19; confidence=low |
| Rice | Os09g0372900 (OsFbox482)- identity=30.1; qcov=0.729; evalue=4.46e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03478 (Beta-prop_KIB1-4); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018200 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057802908.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057802908.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057802908.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057802908.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057802908.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:5836130 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B17,B26,C78 |
Chr3:5836130 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B17,B26,C78 |
Chr3:5836164 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A23,A24,B134,B31,B48,B52,B58,B60,B77,C16,C20,C51,C52,C70,C74,C82 |
Chr3:5836292 |
T |
TA |
1bp_insertion | frameshift_variant | 79 | A14,A18,A2,A21,A23,A24,B111,B112,B115,B117,B127,B128,B129,B132,B134,B137,B138,B139,B15,B16,B18,B20,B22,B23,B24,B25,B30,B31,B45,B48,B52,B58,B59,B60,B63,B72,B77,B83,B84,B85,B88,B93,B95,B98,C10,C13,C16,C17,C20,C21,C23,C25,C26,C28,C30,C33,C35,C38,C39,C40,C44,C45,C46,C5,C52,C63,C7,C70,C72,C73,C74,C75,C76,C79,C82,C9,D3,D4,D8 |
Chr3:5836340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B134,C13,C28,C79,C80 |
Chr3:5836377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C26 |
Chr3:5836455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B35,C15 |
Chr3:5836466 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | B100,C72,C80 |
Chr3:5836466 |
G |
GT |
1bp_insertion | CDS_variant | 3 | B100,C72,C80 |
Chr3:5836489 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A9,B107,B60,B65 |
Chr3:5836489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B107,B60,B65 |
Chr3:5836515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B89,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802908.1PF08268
FBA_3 24-203 aa
PF03478
Beta-prop_KIB1-4 28-206 aa
PF07734
FBA_1 28-220 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802908.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 24 | 203 | 2.9e-14 | 53.5 | F-box associated beta propeller domain |
XP_057802908.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 28 | 206 | 7.6e-11 | 42.7 | KIB1-4 beta-propeller |
XP_057802908.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 28 | 220 | 4.4e-23 | 82.5 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。