Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001449`

染色体: Chr01 坐标: 28196534-28200948 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001449`
名称	SmilChr01G001449
描述	uncharacterized SmilChr01G001449
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	28196534 - 28200948 / `-`

ID 对照

NCBI Gene ID	`LOC131018205`
GeneID	`131018205`
locus_tag	`-`
NCBI Name	`LOC131018205`
原始查询	`LOC131018205`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Inositol monophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836559]; symbol=AT5G64380; hit=AT5G64380; species=arabidopsis; confidence=high
产物	Inositol monophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836559]; symbol=AT5G64380; hit=AT5G64380; species=arabidopsis; confidence=high
Arabidopsis	`AT5G64380` (AT5G64380) Inositol monophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836559] identity=67.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0664200` (P0473H04.3-1) - identity=76.3; qcov=0.837; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0005986 (sucrose biosynthetic process); GO:0006000 (fructose metabolic process); GO:0006002 (fructose 6-phosphate metabolic process); GO:0006094 (gluconeogenesis); GO:0030388 (fructose 1,6-bisphosphate metabolic process); GO:0042132 (fructose 1,6-bisphosphate 1-phosphatase activity)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00316 (FBPase); PF18913 (FBPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131018205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057802916.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057802916.1`
3	Nucleus	细胞核	0.00000	`XP_057802916.1`
4	Chromosome	染色体	0.00000	`XP_057802916.1`
5	Centromere	着丝粒	0.00000	`XP_057802916.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:28199064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:28199276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B72,C83
`Chr1:28199277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B2,C2,D10
`Chr1:28199301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr1:28199311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr1:28199450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr1:28199567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,B67
`Chr1:28200304`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C54
`Chr1:28200304`	`GC`	`G`	1bp_deletion	CDS_variant	1	C54
`Chr1:28200306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr1:28200467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:28200488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802916.1

398 aa

199

398

FBPase

FBPase_C

PF00316 FBPase 79-258 aa PF18913 FBPase_C 262-385 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802916.1`	Pfam	`PF00316`	FBPase	Domain	79	258	1.9e-36	126.2	Fructose-1-6-bisphosphatase, N-terminal domain
`XP_057802916.1`	Pfam	`PF18913`	FBPase_C	Domain	262	385	1.1e-36	126.2	Fructose-1-6-bisphosphatase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100058.1
CTTGATCGATACCAACTGCCACGCTCACTATGTTTCTGAGTTTGAATTTCAGTTTCAAGCATTTCTCTTGATCGAAGTTCAATTCAATCCAGATAAAACTTGACCAACCAAATTCCCAAATGCATTTCCTAAATCCCGAAGATAAAATCGCCACCCCAACCAAGAAATGTAACCTTAGCCCATCTCAAATGAGCCCTTCTACACTATTTTCCTGCTGCCCCACTACACAGAGATGCATTCAGCAACCATATTCGTGAACC...

XR_009100055.1
CTTGATCGATACCAACTGCCACGCTCACTATGTTTCTGAGTTTGAATTTCAGTTTCAAGCATTTCTCTTGATCGAAGTTCAATTCAATCCAGATAAAACTTGACCAACCAAATTCCCAAATGCATTTCCTAAATCCCGAAGATAAAATCGCCACCCCAACCAAGAAATGTAACCTTAGCCCATCTCAAATGAGCCCTTCTACACTATTTTCCTGCTGCCCCACTACACAGAGATGCATTCAGCAACCATATTCGTGAACC...

CDS

1 records

下载 CDS FASTA

LOC131018205
ATGCATTCAGCAACCATATTCGTGAACCCCATCTCAAATTATCCTTCAAGAGTTCACCTTTTCCCTCCAAAGATTCAAAATTCCCCGCCACAATTTAGTCTTGGAACTCAGCCCCTGGGAAAAATGGCGTTTCTTGGTGGATCGGGCTCCAAAATCAGTGCAATTGCCTCCGGCGGGGATGGTGGCGGCGCTGGATTTCAGACTCTGGCGGAGTATATGGGGAAAGGCGGCGCAAACGTTGGCGATGAGCTGGTGGTGCT...

Protein

1 records

下载 Protein FASTA

XP_057802916.1
MHSATIFVNPISNYPSRVHLFPPKIQNSPPQFSLGTQPLGKMAFLGGSGSKISAIASGGDGGGAGFQTLAEYMGKGGANVGDELVVLFTHLEYACKKIAALVASPFSSNLGKSFSTAAGSAERDKPKPLDIVANEIILSSLKNSGKVAVMASEEDDAPVWLADDGPFVVVLDPLDGSRNIDASIPTGTIFGIYKKLEELSHLPIEEKALLNSLQSGTKLIASGYVLYSSATILCTSFGSGTHAFTLDHSTGDFILTHPNI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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