Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000604`

染色体: Chr03 坐标: 6687924-6689060 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000604`
名称	SmilChr03G000604
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6687924 - 6689060 / `-`

ID 对照

NCBI Gene ID	`LOC131018215`
GeneID	`131018215`
locus_tag	`-`
NCBI Name	`LOC131018215`
原始查询	`LOC131018215`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=24.8; qcov=1.12; evalue=7.21e-20; confidence=weak
Rice	`Os09g0479100` (OsFbox492) - identity=26.3; qcov=0.714; evalue=1.32e-09; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018215

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802923.1`
2	Cytoplasm	细胞质	1.00000	`XP_057802923.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802923.1`
4	Chromosome	染色体	0.00000	`XP_057802923.1`
5	Centromere	着丝粒	0.00000	`XP_057802923.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6687937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B39,B43,B91
`Chr3:6687970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B41,B81,C10,C63,C71
`Chr3:6687985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:6688090`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B96,C16,C74
`Chr3:6688164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C55
`Chr3:6688338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr3:6688461`	`C`	`CT`	1bp_insertion	frameshift_variant	114	A11,A19,A2,A3,A4,A6,A8,A9,B100,B103,B106,B108,B11,B110,B112,B114,B115,B117,B119,B120,B123,B125,B126,B132,B133,B136,B14,B15,B2,B20,B26,B27,B28,B29,B3,B30,B33,B34,B36,B4,B41,B45,B47,B52,B56,B57,B58,B64,B65,B66,B69,B7,B73,B74,B76,B77,B8,B81,B82,B88,B9,B90,B92,B96,B99,C1,C10,C11,C16,C19,C20,C22,C24,C26,C27,C28,C32,C33,C34,C37,C41,C42,C43,C44,C45,C49,C5,C51,C52,C54,C55,C56,C57,C59,C6,C60,C63,C67,C68,C69,C71,C74,C76,C78,C79,C8,C81,C82,C84,D10,D11,D2,D4,D7
`Chr3:6688463`	`GA`	`G`	1bp_deletion	frameshift_variant	114	A11,A19,A2,A3,A4,A6,A8,A9,B100,B103,B106,B108,B11,B110,B112,B114,B115,B117,B119,B120,B123,B125,B126,B132,B133,B136,B14,B15,B2,B20,B26,B27,B28,B29,B3,B30,B33,B34,B36,B4,B41,B45,B47,B52,B56,B57,B58,B64,B65,B66,B69,B7,B73,B74,B76,B77,B8,B81,B82,B88,B9,B90,B92,B96,B99,C1,C10,C11,C16,C19,C20,C22,C24,C26,C27,C28,C32,C33,C34,C37,C41,C42,C43,C44,C45,C49,C5,C51,C52,C54,C55,C56,C57,C59,C6,C60,C63,C67,C68,C69,C71,C74,C76,C78,C79,C8,C81,C82,C84,D10,D11,D2,D4,D7
`Chr3:6688595`	`G`	`GAT`	2bp_insertion	frameshift_variant	7	A7,B110,B38,B42,B53,B80,B91
`Chr3:6688797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:6688798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:6688811`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B119,B124

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802923.1

378 aa

189

378

F-box

F-box-like

FBA_3

FBA_1

PF00646 F-box 11-50 aa PF12937 F-box-like 12-50 aa PF08268 FBA_3 101-312 aa PF07734 FBA_1 149-318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802923.1`	Pfam	`PF00646`	F-box	Domain	11	50	4.5e-10	39.7	F-box domain
`XP_057802923.1`	Pfam	`PF12937`	F-box-like	Domain	12	50	6.9e-06	26.4	F-box-like
`XP_057802923.1`	Pfam	`PF08268`	FBA_3	Repeat	101	312	1.4e-12	48.0	F-box associated beta propeller domain
`XP_057802923.1`	Pfam	`PF07734`	FBA_1	Repeat	149	318	9.4e-19	68.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946940.1
ATGGAGATCGGAAAAAGTAGACGAAAATCTCTCCATCTTCCTGAAGAAACCATTGAAGAAATACTATCCAGACTTGCGGTGAATTCAGTTTTGAAGTTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGATAGCGAACGTTTCATCAAAACCCATCATCAAAATTCAATTAAAAACCCATCTTTCCCCCAACAAAGGCTCATTTTAAAGAACTATTTGTTTGATGAGTTTGATGATTGGCCTGTGCAATCTTCTCT...

CDS

1 records

下载 CDS FASTA

LOC131018215
ATGGAGATCGGAAAAAGTAGACGAAAATCTCTCCATCTTCCTGAAGAAACCATTGAAGAAATACTATCCAGACTTGCGGTGAATTCAGTTTTGAAGTTCAGGTGCGTTTCGAAATCATGGGGCTCTTTAATTGATAGCGAACGTTTCATCAAAACCCATCATCAAAATTCAATTAAAAACCCATCTTTCCCCCAACAAAGGCTCATTTTAAAGAACTATTTGTTTGATGAGTTTGATGATTGGCCTGTGCAATCTTCTCT...

Protein

1 records

下载 Protein FASTA

XP_057802923.1
MEIGKSRRKSLHLPEETIEEILSRLAVNSVLKFRCVSKSWGSLIDSERFIKTHHQNSIKNPSFPQQRLILKNYLFDEFDDWPVQSSLPSVLSEPPNTISLSPLAVQTNTIRFEILGCYNGLLCILEQPSGIYSWNPSIGISRNLPEQPCRIHLWNPSTGISKKLPEISNVGYVSDFGFGWVESSGEYKVFVNVANLDNYRWKWVGKVYSSKTKSWKTIEHCEEYLCTYRCKEGVFAGGKLYWTNYNGHKEDIIFLDLKSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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