Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G000608`

染色体: Chr03 坐标: 6714808-6715955 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G000608`
名称	SmilChr03G000608
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	6714808 - 6715955 / `-`

ID 对照

NCBI Gene ID	`LOC131018218`
GeneID	`131018218`
locus_tag	`-`
NCBI Name	`LOC131018218`
原始查询	`LOC131018218`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT3G23880` (AT3G23880) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=37.6; qcov=0.78; evalue=1.35e-18; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=30.2; qcov=0.867; evalue=6.85e-15; confidence=low
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131018218

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057802926.1`
2	Cytoplasm	细胞质	0.60000	`XP_057802926.1`
3	Cytosol	细胞质基质	0.20000	`XP_057802926.1`
4	Chromosome	染色体	0.00000	`XP_057802926.1`
5	Centromere	着丝粒	0.00000	`XP_057802926.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:6714849`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B12,B4,B68
`Chr3:6714849`	`T`	`TG`	1bp_insertion	CDS_variant	3	B12,B4,B68
`Chr3:6714851`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B12,B4,B68
`Chr3:6714851`	`GA`	`G`	1bp_deletion	CDS_variant	3	B12,B4,B68
`Chr3:6715439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr3:6715473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr3:6715498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B34,B63,C27,C74
`Chr3:6715562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:6715582`	`A`	`AG`	1bp_insertion	frameshift_variant	41	A10,A11,A15,A2,A5,B123,B134,B138,B140,B16,B2,B21,B28,B4,B46,B53,B60,B64,B66,B98,C1,C18,C19,C22,C25,C3,C33,C35,C4,C42,C58,C59,C60,C61,C64,C66,C75,C83,D2,D3,D9
`Chr3:6715586`	`GC`	`G`	1bp_deletion	frameshift_variant	44	A10,A11,A15,A2,A5,B123,B134,B138,B140,B16,B2,B21,B28,B4,B46,B53,B60,B64,B66,B83,B98,C1,C18,C19,C22,C25,C3,C33,C34,C35,C4,C42,C58,C59,C60,C61,C64,C66,C75,C83,D10,D2,D3,D9
`Chr3:6715590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr3:6715643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B115,B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057802926.1

218 aa

109

218

F-box-like

F-box

FBA_1

PF12937 F-box-like 15-51 aa PF00646 F-box 16-53 aa PF07734 FBA_1 112-189 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057802926.1`	Pfam	`PF12937`	F-box-like	Domain	15	51	1.6e-08	34.9	F-box-like
`XP_057802926.1`	Pfam	`PF00646`	F-box	Domain	16	53	3.7e-11	43.2	F-box domain
`XP_057802926.1`	Pfam	`PF07734`	FBA_1	Repeat	112	189	2e-06	27.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057946943.1
ATGGATCGGGAAAACGCTCCTCCTCCGAGCAGGAAACTCCGCTATCTTCCCGAAGAAATAATCGAAGAAATACTGTCAAGACTTGCTGTGAAATCACTGCTGAGATTCAGGTGCGTTTCGAAATCATGGCGTTGTTTAATGAGTAGCGAGAGATTCATCAGAACCCAACTGGAGAAATCAAGCAATGACCCAACTGCCGCCCATTGGCAAGTTATGGTCAACTGTGAGTCAATAAATTCAGTATTTGGATTGAAGCAATG...

CDS

1 records

下载 CDS FASTA

LOC131018218
ATGGATCGGGAAAACGCTCCTCCTCCGAGCAGGAAACTCCGCTATCTTCCCGAAGAAATAATCGAAGAAATACTGTCAAGACTTGCTGTGAAATCACTGCTGAGATTCAGGTGCGTTTCGAAATCATGGCGTTGTTTAATGAGTAGCGAGAGATTCATCAGAACCCAACTGGAGAAATCAAGCAATGACCCAACTGCCGCCCATTGGCAAGTTATGGTCAACTGTGAGTCAATAAATTCAGTATTTGGATTGAAGCAATG...

Protein

1 records

下载 Protein FASTA

XP_057802926.1
MDRENAPPPSRKLRYLPEEIIEEILSRLAVKSLLRFRCVSKSWRCLMSSERFIRTQLEKSSNDPTAAHWQVMVNCESINSVFGLKQCSVRSYLDDPDVDPFPIDGPTNHHLTTDAYVVGNCDGLICILKKPGSLFLWNPVTRISIELPKLDLGIKKYGFGRDEQSGAYKVFVVGSRYEEEEEEEEEEYEYEYEYEYEYEPIGAKSIKGGILNYPPFLE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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