当前解析结果
SmilChr03G000649| 统一新 Gene ID | SmilChr03G000649 |
|---|---|
| 名称 | SmilChr03G000649 |
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 7229902 - 7230961 / - |
| NCBI Gene ID | LOC131018234 |
|---|---|
| GeneID | 131018234 |
| locus_tag | - |
| NCBI Name | LOC131018234 |
| 原始查询 | LOC131018234 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/kelch-repeat protein At3g23880-like |
| 产物 | F-box/kelch-repeat protein At3g23880-like |
| Arabidopsis | AT3G23880 (AT3G23880)F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821971] identity=31.2; qcov=0.82; evalue=1.09e-24; confidence=low |
| Rice | Os09g0479100 (OsFbox492)- identity=27.5; qcov=0.698; evalue=5.31e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131018234 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057802941.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057802941.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057802941.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802941.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802941.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:7229958 |
GGA |
G |
2bp_deletion | frameshift_variant | 2 | B140,C20 |
Chr3:7229958 |
GGA |
G |
2bp_deletion | CDS_variant | 2 | B140,C20 |
Chr3:7230032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B37,B49,B78,C59,C9 |
Chr3:7230052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B37,B49,C59,C9 |
Chr3:7230066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B37,B49,C59,C9 |
Chr3:7230073 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B44 |
Chr3:7230081 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B37,C6 |
Chr3:7230091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B37,C6 |
Chr3:7230098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B37,C6 |
Chr3:7230102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr3:7230166 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B8 |
Chr3:7230166 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057802941.1PF00646
F-box 11-49 aa
PF12937
F-box-like 13-48 aa
PF08268
FBA_3 88-267 aa
PF07734
FBA_1 89-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802941.1 |
Pfam | PF00646 |
F-box | Domain | 11 | 49 | 2.5e-10 | 40.5 | F-box domain |
XP_057802941.1 |
Pfam | PF12937 |
F-box-like | Domain | 13 | 48 | 9.7e-07 | 29.2 | F-box-like |
XP_057802941.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 88 | 267 | 1.9e-15 | 57.4 | F-box associated beta propeller domain |
XP_057802941.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 89 | 261 | 2.1e-16 | 60.5 | F-box associated beta propeller domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。